Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01463 ATGGCCCTAGAGGCTGTGGTTTTCCCACAAGATCCATTCACCTACAGTTGCAAAGATTATTTGTTCTCTTTAGTAAATGGAGGAACCGCACAAGAAGAGAAAGCACTTCTTGGAATCATCAACAACAATAACATAGAGCAAAATCTCCATGCAAATTGGGACTCTTCTTCATCTTCAGTGTTACAAAATGTCAAGGAACAATGGGATTCACACTCTTCCCCAGAAGAAACCTGCACCTTTGATCAATCTCTATCAGGAGCTTTGTCTCTTCCTCCTTCCTCCGTTGATTCCGCCCCAACCGCCGCCACGGGTCGGCGCAAACGACGTCGTACCAAGAGTGTGAAAAACGAGGAGGAAATCGAGAATCAGAGGATGACCCACATTGCAGTTGAGCGTAATCGAAGGAAACAAATGAATGAGTACCTCGCTATGCTCAGATCTCTGATGCCACCTTCTTATGTACAAAGGGGTGATCAAGCTTCCATTATTGGAGGTGCCATTAACTTTGTGAAGGAGTTGGAGCAGCTTCTACAGTGCATGAAGGGTCGAAAGAAAACAAAGGAAAATGGTTCACCCTTTGCTGAGTTCTTCATGTTCCCTCAGTACTCAACGCGTGAAACTCAAAGCAGCACAAGCTATAACACTAGCGAGGGGAACATGACACAGAACCAGAACCTGAACCAGTCACGTGCAGTAGCAGATATAGAAGTGACCTTGGTGGATAGCCATGCCAACATAAAGATACTATCAAAGAAACAACCAGGGCAGCTTATGAAGATGGTTGTTGGGTTACAAAGTCTTGGCTTTAGCATTCTTCATCTTAATGTTACCACTGTGGATGATATGATCCTTGCCTCAGTTAGTGTAAAGGTAGAGGAAGGGTGTCAGCTGAACTCGGTGGATGAAATTGCAGCTGCTGTGAATCAATTATCACGCACAGTTCAGGAGGAAGCTGCTACTTTCAGCTGA 969 0.4489 MALEAVVFPQDPFTYSCKDYLFSLVNGGTAQEEKALLGIINNNNIEQNLHANWDSSSSSVLQNVKEQWDSHSSPEETCTFDQSLSGALSLPPSSVDSAPTAATGRRKRRRTKSVKNEEEIENQRMTHIAVERNRRKQMNEYLAMLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGRKKTKENGSPFAEFFMFPQYSTRETQSSTSYNTSEGNMTQNQNLNQSRAVADIEVTLVDSHANIKILSKKQPGQLMKMVVGLQSLGFSILHLNVTTVDDMILASVSVKVEEGCQLNSVDEIAAAVNQLSRTVQEEAATFS* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01463 322 PANTHER MAX DIMERIZATION, MAD 67 318 - -
Rops9g01463 322 CDD bHLH_AtFAMA_like 125 188 - -
Rops9g01463 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 173 IPR011598 GO:0046983
Rops9g01463 322 FunFam Basic helix-loop-helix transcription factor 113 188 - -
Rops9g01463 322 SMART finulus 128 179 IPR011598 GO:0046983
Rops9g01463 322 Pfam Helix-loop-helix DNA-binding domain 123 174 IPR011598 GO:0046983
Rops9g01463 322 MobiDBLite consensus disorder prediction 89 117 - -
Rops9g01463 322 Gene3D - 112 189 IPR036638 GO:0046983
Rops9g01463 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 188 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01463 Rops-Chr9 24334764 24336161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01463 1 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.408 1.08e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops9g01463 HLH 7.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01463 - - gmx:100797856 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01463 9 24334764 24336161 Rops9g01463 9 24334764 24336161 ECH
Rops9g01463 9 24334764 24336161 Rops10g01751 10 32750691 32752494 PCT