Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01462 ATGCATGCAAAGATTTCACCACCAGTGACGGCTCAATCTGTTGCACCAGAAGTAGAGGTAGATAATAACAAATCCGTAGCCACCATCATGGGAATCGTGGCCCTTATGTTCCTCGTCTCAGGTTTCCTTTCCCTCTACTCCGGCAAATGCAGCGACCGACAAGGAAACAGGCTCGAACTCACTCTTCCCACAGGTGGAAGCGGTCGCCGGTCACCAAATGAAGCACGCAGCGGTCTCAACCAAGAAATCATCGACACGTTCCCAACTTTCCTCTATTCCAACGTGAAGGGACTCAAAATTGGCAAAGGAACCTTAGCATGTGCCGTGTGCTTGAATGAGTTCCAAGACGAAGAAACCCTACGTATGATCCCCAAATGCAGCCACGTGTACCACCCTATTTGCATCGATGCTTGGTTAGCCTCTCATATAACATGCCCACTTTGCCGTGCAAACCTTGTTCCAAGACCAGAGGACACAACAACAACAACACTGCCTCCAATTACTGTTTCCATTGAGATGCCGGAAGATCATGAATTGCACACAAACGATGAAGAAGAACAACAACCTGCTGTTGGCGACACAATAGAGGACCAAAAAAGAGACAGTGATGTGGAATCACCGAAGGTGGATTTGCTTCATCGGTGTCGTACGACGAATCAGTGTTTTTCAACACGGTCGAGATCAACTGGGTTCTTATCTTCTCTCTTGTTTCCGAGGTCAAATTCAATGGGTTTGGGACAACCTAGTGAGAATTGTGAAAGGTTTACTCTTAGGTTACCCGATGAGGTTCGGAGCCAGATGATAAAGTCCACAACTCTGAAGCGTGCGAATAGTTGTGTGAACTTTACGAGGATGAGTAGTGGGACGTGGGGTTATAGGACAAGAAGCGTGGGAAATGGACGTGGAAGGGACTATGTGCAATATGAGAGGTTTGGGATTGGGATTGGCAGTGAGGAGCAGTTAGGGTTCAGTTTGACACCAACGAATTTCTTTAGGAACGGTTGGAATAGATCAATGAGAAAATCACCTGTTCGGTGTTCGGGTTTGAGTTTGGGTTTGGACAATAATGTTGGTGAGCGATCCTCTGATCTCTTGTGTCCTACATAG 1107 0.4697 MHAKISPPVTAQSVAPEVEVDNNKSVATIMGIVALMFLVSGFLSLYSGKCSDRQGNRLELTLPTGGSGRRSPNEARSGLNQEIIDTFPTFLYSNVKGLKIGKGTLACAVCLNEFQDEETLRMIPKCSHVYHPICIDAWLASHITCPLCRANLVPRPEDTTTTTLPPITVSIEMPEDHELHTNDEEEQQPAVGDTIEDQKRDSDVESPKVDLLHRCRTTNQCFSTRSRSTGFLSSLLFPRSNSMGLGQPSENCERFTLRLPDEVRSQMIKSTTLKRANSCVNFTRMSSGTWGYRTRSVGNGRGRDYVQYERFGIGIGSEEQLGFSLTPTNFFRNGWNRSMRKSPVRCSGLSLGLDNNVGERSSDLLCPT* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01462 368 FunFam E3 ubiquitin-protein ligase ATL6 68 155 - -
Rops9g01462 368 MobiDBLite consensus disorder prediction 179 207 - -
Rops9g01462 368 SUPERFAMILY RING/U-box 101 155 - -
Rops9g01462 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Rops9g01462 368 Pfam Ring finger domain 106 149 IPR001841 -
Rops9g01462 368 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Rops9g01462 368 SMART ring_2 107 148 IPR001841 -
Rops9g01462 368 CDD RING-H2_EL5-like 107 149 - -
Rops9g01462 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 15 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01462 Rops-Chr9 24295983 24297181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01462 25 291 Rapid Response to Elicitors AT3G05200 39.706 6.32e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01462 K10664 - gmx:100814384 402.134