Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01460 ATGGGCATCCATATGGAATATCCTGCACCTGCACTCACTCCTCTCACACTCTTACCACTGTGGAATTTTGATCATGGCCGTCCCTGGTCTCTTCTTGTTCTTGTTCTTCTTTTGGTGCAGCCGGCCACCGCACAGTCCCAAAAGACTGTGCCTCCGCCACCACCGGACCCATTGGCGAGGCTGAGGTTTGACAAGACCATGGCGGTGGTTCTGGTGATCCTCATCGTGGTTTTCTTCATCTTGGGTTTCATCTCGATCTACACTCGCCATTGTGCGGAGCAAAGGATCAGGGGAAGGTTTGACCTCGCCATCCCCATCACCGGTGGAAACGGTGGCCGGTTACCTGGTGGACTCGATCGGTCCATCATTGAAACGTTCCCCACCTTCATCTACTCCGACGTAAAAAGCCTCAAGATAGGGAGGGCCACGCTAGAATGCGCCGTGTGCCTCAACGAGTTCGGTGACGATGAAACGCTGCGTTTGATCCCCAAATGCAGCCACGTGTTTCACCCTGAATGTATTGATGTCTGGTTGGTTAATCACTCCACTTGTCCCGTGTGCCGTGCCAACCTCGTACCTAAACCTGGTGACATGTCTTCTTCGGTAGCAATCCAGATCCCAGATCCACCCGAAGCAGAATCCGTTCACGACCCGAATTGCGTTAATCGGGTCATTGACGATGATCAAAACAGAGTAATAACGGAGCCTCCAAGGGTGGGTTTGGATGTTCGGAACCGTCCGGTTCGGTCCAGATCAACCGGATTGGGAATCGCGAGACTGTTTCCACGCTCTCACTCGACCGGTCACTCACTGGTTCGACCGGGAGAGGATTGTGAACGGTTCACGCTGAGGTTACCAGAGGAAGTGCGGAACCGGTTGGTGAACACTGCCACACTGAACCGAACGAAGAGTTGCGGTGTGACGTTGCAGCGAGAGAGTAGTGGGAGGAGGGGTTACAGGACAAGGAGCGTGGGGAGGAACTATTTGCAATATGAACGGTTCGATGGAGAGGACCGGTCCGACCGGTGGGGGTTCAGGTGCACTCCGCCGTTTTTGGCTAGACCCGGTTCGGTGAGATCACCAAAGAATGCCAACAAGGCATCGATGGCGATGGATGAAGTCAACGTGGGAGAACGTTCTTCTGATCGTTTATTTTATAATATTTGA 1167 0.533 MGIHMEYPAPALTPLTLLPLWNFDHGRPWSLLVLVLLLVQPATAQSQKTVPPPPPDPLARLRFDKTMAVVLVILIVVFFILGFISIYTRHCAEQRIRGRFDLAIPITGGNGGRLPGGLDRSIIETFPTFIYSDVKSLKIGRATLECAVCLNEFGDDETLRLIPKCSHVFHPECIDVWLVNHSTCPVCRANLVPKPGDMSSSVAIQIPDPPEAESVHDPNCVNRVIDDDQNRVITEPPRVGLDVRNRPVRSRSTGLGIARLFPRSHSTGHSLVRPGEDCERFTLRLPEEVRNRLVNTATLNRTKSCGVTLQRESSGRRGYRTRSVGRNYLQYERFDGEDRSDRWGFRCTPPFLARPGSVRSPKNANKASMAMDEVNVGERSSDRLFYNI* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01460 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 193 IPR013083 -
Rops9g01460 388 FunFam E3 ubiquitin-protein ligase ATL6 110 194 - -
Rops9g01460 388 PANTHER RING FINGER DOMAIN-CONTAINING 41 197 - -
Rops9g01460 388 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Rops9g01460 388 CDD RING-H2_EL5-like 145 188 - -
Rops9g01460 388 SUPERFAMILY RING/U-box 145 199 - -
Rops9g01460 388 Pfam Ring finger domain 145 188 IPR001841 -
Rops9g01460 388 SMART ring_2 146 187 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01460 Rops-Chr9 24235691 24236857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01460 31 379 Rapid Response to Elicitors AT3G05200 42.133 3.98e-74 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01460 K10664 - gmx:100807828 461.455