Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01452 ATGAGAAGGTTTACATGGTTAACGCCGTATCGGCGCCATTTGCTTTCGTCTGTGGCCTCACAACCGCTCGTTGATAAAGGAGAGTCGTTCGGAAAATACTTGTCGTCTCGCCAATCGTTGTTGTTGGCACGAGCTTTGGTCAATTGCAGTTGGATCACCAAAAAAACGGAGGATTCTTTAATTCCGAGAATTCCATTGAGATATCGTTATATTCGTGCCGCAGCATTTTCTACTTATGCCGAACGAGACTATTACCGGATTCTTGGTGTTCCTGAAAGTGCTAGCCAGGACGAGATAAAGAAGGCATTTCACTCGCTCGCTAAAAAGTACCATCCAGATGCAAATAAGAATAATCCATCAGCAAAGAGGAAATTTCAAGACATAAGAGAAGCATATGAGGCATTGAGAGACTCGAAAAGGAGGGCAGAGTATGACAAGATGCGTACTCATGGCTCAGAAAACATAGAATATGGTGATGATGATACAGAAAGGTTTCAAAATGCTTTTCGATCTCATTTTTCTGATTCATTTCATAAAGTATTCTCTGAGATATTTGAAGAAGCAACAACTCAATTCTCATCAAATATAGAGGTGGAGTTGTGTCTTACTTTCTCAGAAGCTGCTAGAGGATGCACCAAACTCCTGTCATTTGATGCGTTAGTTGCCTGTGATCATTGCAATGGGCGGGGCTATCCACTAGATGCCAAACCAAAAGTTTGTCCCATATGCAGGGGCTTAGGTCGAGTTACAATCCCACCATTTACATCAACATGCAGTACTTGTAAAGGATCAGGCCGTATCATTGAGGACTTTTGTATGCCGTGTAGAGGATCTGGGGTTGTTGAAGGGATTAAGGAGGTTAAAGTTACAATACCAGCAGGTGTGGATTCAGGAGATACAATCCATGTGCCAGAAGCTGGGAATACTGCTGGAAGTGGAGGTCGATCTGGAAGTTTATACATTAAAATAAAGGTGGCTGAGGATTCAGTCTTTGTCAGAGATGGTGCAGATATCTATGTGGAATCTAATATTAGCTTTACCCAGGCTATTCTTGGTGGCAAAGTTGAGGTGCCTACTTTATCAGGGAAGATGCAAGTAAAAATACCTAAAGGTGTTCAACCAGGACAGCTTCTGGTATTTAGAGGCAAAGGACTGCCAAAGCATGGGTTTCTTGTACATCATGGGGATCAGTATGTGCGTTTCCGTGTTAACTTTCCCATTGCAATCAATGAAAGACAACGTGCTATACTAGAAGAGTTTGCAAAGGAGGAAATAAAGGAGGGAAATAGCTCATCATTTGAAGGAAATTGGTGGCAGCAAATTCTTGAACACATGACGGGTCCAAAGTTTATGCTGGAACTATCTATGCTGATATTAGTCCTTGTCTTCATTAACAAAATATTGAGCTGA 1410 0.4184 MRRFTWLTPYRRHLLSSVASQPLVDKGESFGKYLSSRQSLLLARALVNCSWITKKTEDSLIPRIPLRYRYIRAAAFSTYAERDYYRILGVPESASQDEIKKAFHSLAKKYHPDANKNNPSAKRKFQDIREAYEALRDSKRRAEYDKMRTHGSENIEYGDDDTERFQNAFRSHFSDSFHKVFSEIFEEATTQFSSNIEVELCLTFSEAARGCTKLLSFDALVACDHCNGRGYPLDAKPKVCPICRGLGRVTIPPFTSTCSTCKGSGRIIEDFCMPCRGSGVVEGIKEVKVTIPAGVDSGDTIHVPEAGNTAGSGGRSGSLYIKIKVAEDSVFVRDGADIYVESNISFTQAILGGKVEVPTLSGKMQVKIPKGVQPGQLLVFRGKGLPKHGFLVHHGDQYVRFRVNFPIAINERQRAILEEFAKEEIKEGNSSSFEGNWWQQILEHMTGPKFMLELSMLILVLVFINKILS* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01452 469 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Rops9g01452 469 CDD DnaJ_C 194 406 - -
Rops9g01452 469 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 210 281 IPR036410 -
Rops9g01452 469 Pfam DnaJ C terminal domain 196 406 IPR002939 -
Rops9g01452 469 Pfam DnaJ central domain 223 279 IPR001305 GO:0031072|GO:0051082
Rops9g01452 469 Hamap Chaperone protein DnaJ [dnaJ]. 80 428 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Rops9g01452 469 SUPERFAMILY HSP40/DnaJ peptide-binding domain 195 326 IPR008971 GO:0006457|GO:0051082
Rops9g01452 469 ProSiteProfiles Zinc finger CR-type profile. 210 284 IPR001305 GO:0031072|GO:0051082
Rops9g01452 469 SUPERFAMILY HSP40/DnaJ peptide-binding domain 330 417 IPR008971 GO:0006457|GO:0051082
Rops9g01452 469 Gene3D - 194 324 - -
Rops9g01452 469 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 51 427 - -
Rops9g01452 469 FunFam Chaperone protein dnaJ 1, mitochondrial 326 432 - -
Rops9g01452 469 CDD DnaJ_zf 223 279 IPR001305 GO:0031072|GO:0051082
Rops9g01452 469 Gene3D - 326 434 - -
Rops9g01452 469 SUPERFAMILY Chaperone J-domain 79 177 IPR036869 -
Rops9g01452 469 PRINTS DnaJ domain signature 85 103 IPR001623 -
Rops9g01452 469 PRINTS DnaJ domain signature 140 159 IPR001623 -
Rops9g01452 469 PRINTS DnaJ domain signature 103 118 IPR001623 -
Rops9g01452 469 PRINTS DnaJ domain signature 120 140 IPR001623 -
Rops9g01452 469 Gene3D - 253 286 - -
Rops9g01452 469 Gene3D - 219 252 - -
Rops9g01452 469 Gene3D DnaJ domain 79 193 IPR036869 -
Rops9g01452 469 SMART dnaj_3 82 140 IPR001623 -
Rops9g01452 469 Pfam DnaJ domain 83 145 IPR001623 -
Rops9g01452 469 ProSiteProfiles dnaJ domain profile. 83 148 IPR001623 -
Rops9g01452 469 FunFam Molecular chaperone DnaJ 215 283 - -
Rops9g01452 469 CDD DnaJ 83 137 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01452 Rops-Chr9 24024158 24034205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01452 74 150 C2H2 Transcription Factor Family AT1G74250 36.585 5.85e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01452 9 24024158 24034205 Rops9g01452 9 24024158 24034205 ECH