Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01446 ATGGAATTTGATGAGCAAGAAGAGCAAGAGGAGGAAATGGAGATCCCGGAAGCGCCTGAGCCGGCGGCGGTGAGTTATAACTCTCTCGGAAACTCCGCATCGAGGAACAAAATCGGAGGCGAAGGAGGTTGGAAAGGCGGTGGTTTCGCCACGACGTCGGGGACGGTGAGGTACAGAGAATGTCAGAAGAACCACGCCGTGAGTTTCGGCGGCCATTCTGTTGACGGTTGTTGTGAGTTCATGGCTGCCGGAGAGGAAGGAACCCTAGAGGCTGTGATTTGCGCAGCCTGTAACTGTCACCGGAACTTCCACCGCAAAGAGATCGACGGCGAGACACAAAGCTTGTGCCAGCGTCCACCACCGCCGCCGCCGATGCACCACCAGTACCACCACCAACAACAACAATTCTCCCCTTACTACCACCGTGGACCGCAGCATCACCCTGCCGCCGGTTACCTCCACCACCACCTTTCAACTCCTCCGATGGCCCACCACCGTCCACTGGCCCTCCCAACCGCCGCGTCAGGAGGAGGACTCAGTAGAGAGGAAGAAGACGTGTCAAACCCTAGCAGCAGCGGCGGAGGCGGCGGCGGCGGTGGAGGAGGAACTAAAAAGAGGTTCAGGACAAAGTTCACACAAGAGCAGAAGGATAAGATGCTTGCGTTTGCGGAACAACTTGGTTGGAGAATCCAGAAACATAACGAAGCTGCTGTTGAACAGTTCTGTGCTGAAACTTGTGTGAAGAGAAATGTTCTCAAGGTTTGGATGCATAACAACAAGAACACTCTTGTTTTATTCCAGTTCTGA 807 0.5465 MEFDEQEEQEEEMEIPEAPEPAAVSYNSLGNSASRNKIGGEGGWKGGGFATTSGTVRYRECQKNHAVSFGGHSVDGCCEFMAAGEEGTLEAVICAACNCHRNFHRKEIDGETQSLCQRPPPPPPMHHQYHHQQQQFSPYYHRGPQHHPAAGYLHHHLSTPPMAHHRPLALPTAASGGGLSREEEDVSNPSSSGGGGGGGGGGTKKRFRTKFTQEQKDKMLAFAEQLGWRIQKHNEAAVEQFCAETCVKRNVLKVWMHNNKNTLVLFQF* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01446 268 NCBIfam homeobox domain, ZF-HD class 204 261 IPR006455 -
Rops9g01446 268 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 57 108 IPR006456 -
Rops9g01446 268 MobiDBLite consensus disorder prediction 1 17 - -
Rops9g01446 268 SUPERFAMILY Homeodomain-like 190 262 IPR009057 -
Rops9g01446 268 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 28 263 - -
Rops9g01446 268 MobiDBLite consensus disorder prediction 113 206 - -
Rops9g01446 268 Pfam ZF-HD protein dimerisation region 56 108 IPR006456 -
Rops9g01446 268 Gene3D - 189 264 - -
Rops9g01446 268 FunFam Zinc-finger homeodomain protein 2 198 264 - -
Rops9g01446 268 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 107 IPR006456 -
Rops9g01446 268 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01446 Rops-Chr9 23874085 23875701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01446 7 268 ZF-HD Transcription Factor Family AT4G24660 51.527 1.32e-70 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops9g01446 ZF-HD_dimer 8.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01446 - - gmx:100776421 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01446 9 23874085 23875701 Rops9g01446 9 23874085 23875701 ECH