Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01427 ATGTTCTCTAAGCTTCAACAGCAGCAACAAAACCTTTTCCAATCCTCCAGGGAATGCCAAACCTCTGAGGATGATGATAGCAGGAGCAGCGGTGGGCCCACGGCCCAGAAGCCCACATCCGGCGACGGTGCCACCATTGAGGTGGTGAGACGGCCCAGGGGCCGCCCACCTGGGTCCAAAAACAAGCCCAAACCGCCGCTTGTAATAACTCATGAGCCCGAGCCCGCCATGAGGCCACACATTCTCGAAGTCCCTGGAGGAAGCGACGTGGTAGAATCCATAGCTCGGTTCAGCCGTCGCAAAAACACTGGCCTATGCATCCTAACCGGTTCAGGAACCGTCGCTAATGTCACACTCCGTCAACCCTCACCCTCTGCCGGCGCCATCGTCACCTTCCACGGCCGTTTCGACATCCTCTCAATTTCTGCCACCTTCTTACCCCACCCCCCGGGATCCTCGCCGCCGGTCCCCAACGGATTCTCAATCTCACTCGCCGGACCTCAGGGCCAGATCGTCGGAGGACTCGTCGTAGGCCGGTTACTCGCCGCCGGAACGGTTTTCATCATAGCAACTTCGTTCAACAATCCCTCGTATCACAGACTTCCCTCGGAAGAGGATGTGAGAAACAACTCCGTCTCCGGCGGCGATGTTCAGTCACCGCCGGTCTCTGGTGGTGGTTCAGAGAGTGGGCATGTACCCGGTGAGTCGTGTATGTATAGCTGTCACCTTCCTTCTGATGTGATTTGGGCTCCAACGGCAAGACCACCACCACCACCTTTCTGA 783 0.576 MFSKLQQQQQNLFQSSRECQTSEDDDSRSSGGPTAQKPTSGDGATIEVVRRPRGRPPGSKNKPKPPLVITHEPEPAMRPHILEVPGGSDVVESIARFSRRKNTGLCILTGSGTVANVTLRQPSPSAGAIVTFHGRFDILSISATFLPHPPGSSPPVPNGFSISLAGPQGQIVGGLVVGRLLAAGTVFIIATSFNNPSYHRLPSEEDVRNNSVSGGDVQSPPVSGGGSESGHVPGESCMYSCHLPSDVIWAPTARPPPPPF* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01427 260 Pfam Plants and Prokaryotes Conserved (PCC) domain 78 195 IPR005175 -
Rops9g01427 260 PIRSF ESCAROLA 1 248 IPR014476 GO:0003680
Rops9g01427 260 Gene3D - 77 211 - -
Rops9g01427 260 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 205 - -
Rops9g01427 260 ProSiteProfiles PPC domain profile profile. 74 214 IPR005175 -
Rops9g01427 260 MobiDBLite consensus disorder prediction 199 231 - -
Rops9g01427 260 MobiDBLite consensus disorder prediction 1 83 - -
Rops9g01427 260 MobiDBLite consensus disorder prediction 207 225 - -
Rops9g01427 260 FunFam AT-hook motif nuclear-localized protein 78 212 - -
Rops9g01427 260 MobiDBLite consensus disorder prediction 26 41 - -
Rops9g01427 260 MobiDBLite consensus disorder prediction 1 18 - -
Rops9g01427 260 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 16 221 IPR014476 GO:0003680
Rops9g01427 260 CDD DUF296 78 193 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01427 Rops-Chr9 23513324 23514346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01427 42 258 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 66.228 1.77e-100 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01427 - - gmx:100811053 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01427 9 23513324 23514346 Rops9g01427 9 23513324 23514346 ECH
Rops9g01427 9 23513324 23514346 Rops10g02246 10 40001492 40003167 PCT