Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01424 ATGCTTCCTTTTCGTAGATTCTACGGTTTCGAGAGCTGGCTAGATCATGAATCAGCTCATGTGGCAGTGGAATTGGACGGTGGGAGATCAAAGACGGAGAGGAAATCAACGGAAGCATGCAAGAGTCACAGGGAAGCTGAGAGGAGACGCAGGCAGCGAATCAACGCTCACCTCTCAACGTTACGCTCTCTACTCCCTAACGCCGCCAAGTCAGACAAGGCGTCGTTACTGGCGGAGGTTGTTCAGCACGTGAAACGGTTGAGGAAACAGGCCGATGACGTGGCATGCGAACCCGGTTCGGTTCTTGAAGCTGAACCGTGGCCGTTTCCAGGTGAGTCTGACGAGGCTACGTTGAGTTATTGCGACGGTGAGGATGGGGAACCGAGGCGGATGAAAGCGACGTTGTGTTGCGAGGACCGGCCCGGTCTGAACCGGGACCTGACGCATGCAATACGGTCGGTTCGGGCAAAGGCGGTTCGAGCGGAGATGATGACGGTTGGGGGAAGGACCAAGAGTGTTGTGGTGATACAGTGGCCTGATGATGGTGATGCAAAAAAGGAAGAGAAGGTGGAGGAGGTTGGAGCTTTGGAACGGGCTTTGAAGGCTGTGATAGAGAATCGGGCTTTGGTTGGCTCAGGGATGGGCCGGGTCGTGTTGGGCCAGAAACGGGCTCGGGAAAGTTATGGCTCGTCTAGTAGTGAGGTTGTTGACTGTGCTTTCGAGGACTTCTGCTAA 735 0.5497 MLPFRRFYGFESWLDHESAHVAVELDGGRSKTERKSTEACKSHREAERRRRQRINAHLSTLRSLLPNAAKSDKASLLAEVVQHVKRLRKQADDVACEPGSVLEAEPWPFPGESDEATLSYCDGEDGEPRRMKATLCCEDRPGLNRDLTHAIRSVRAKAVRAEMMTVGGRTKSVVVIQWPDDGDAKKEEKVEEVGALERALKAVIENRALVGSGMGRVVLGQKRARESYGSSSSEVVDCAFEDFC* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01424 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 99 IPR036638 GO:0046983
Rops9g01424 244 CDD ACT_UUR-ACR-like 134 200 - -
Rops9g01424 244 Gene3D - 32 94 IPR036638 GO:0046983
Rops9g01424 244 Gene3D - 129 208 - -
Rops9g01424 244 Coils Coil 186 206 - -
Rops9g01424 244 Pfam Helix-loop-helix DNA-binding domain 40 87 IPR011598 GO:0046983
Rops9g01424 244 SMART finulus 44 93 IPR011598 GO:0046983
Rops9g01424 244 PANTHER TRANSCRIPTION FACTOR BHLH30 29 226 IPR045847 GO:0003700|GO:0006355
Rops9g01424 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 38 87 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01424 Rops-Chr9 23456114 23456945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01424 35 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 45.665 1.87e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops9g01424 HLH 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01424 - - gmx:100816394 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01424 9 23456114 23456945 Rops9g01424 9 23456114 23456945 ECH