Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01421 ATGCAGCACGCAACGAGAGCAGAAGCAGAACGATTACTAGGGATCGCAGAAAAGCTCTTACAGAACCGCGATCTGATGGGTTCAAGAGAATTCGCCATCCTCGCTCAAGAAACAGAGCCCCTTCTAGAAGGTTCCGATCAGATCTTAGCCATCGTCGACGTCCTACTCGCCTCCGAGAAGCGCGTCAACAACCACCCCGACTGGTACGCCGTTCTCCAAATCGATCGCCGCTCCGACGACCTCGACCTCATCAAAAAGCAATATCGCCGCCTCGCCCTCCTCCTCCACCCTGACAAAAGCCGCTTCCACTTCGCCGACCACGCCTTCAAGCTCGTCGCCGACGCCTGGGCCATACTCTCCGATCCAATCAAAAAATCTCACTACGACAAAGATCTCTCTTTCTTCTCACGCGTCGATTTATCCGTTCCCGGTTGGGTCCAGCAAGAGAAATTACCCGTTCGCAGGACTGGGCCCGGGCCAGGGCCCAGCCCAAACCCTCGTAACCACCAGGCAAACACGACGTTTTGGACGGCGTGTCCGTACTGTTACCGTTTATATGAGTACCCTAAGGTATACGAGGGTTGTTGTTTGAGGTGCCCTAATTGTGAGAGATCCTTTCACGGCGTTGCGGTTCCGTCTTTGCCGCCGTTAGTTCCGGGACAAGAGGCTTATTATTGTTGCTGGGGTTTCTTTCCGATGGGTTTCGTTGCTGGAAACGTTGGTTCCGTTGAGAAAGAGGCTGCGCCGGCGCCGGCTCCAGCACCGGTGCAGCCTCAACCTGTTTCTTCTTCGCTTCCGAATTGGATGCCGGTGCCGGCGGAGAATGGTGCCAATAATGTGACACCCTCGCCGGCGCCGGCGCCGGCTCCTGCGAGGGTAACTAGGGCAAGTGCTTCGGGTGTTCCAAACGGGGTTGCTTCGGGTTCGGGAACTACTCCAAAGAAGCGAGGGAGGCCGAGGAACTGCTTCGGTTGTGTAGTTTGTAGGGTTGATTCGCCAATTCACCTAGTTGAGGAGGAGAACAATGTTACTATAATTGAAAGTAGATTCACAAGGCCTCAAAATTGCTAA 1071 0.5462 MQHATRAEAERLLGIAEKLLQNRDLMGSREFAILAQETEPLLEGSDQILAIVDVLLASEKRVNNHPDWYAVLQIDRRSDDLDLIKKQYRRLALLLHPDKSRFHFADHAFKLVADAWAILSDPIKKSHYDKDLSFFSRVDLSVPGWVQQEKLPVRRTGPGPGPSPNPRNHQANTTFWTACPYCYRLYEYPKVYEGCCLRCPNCERSFHGVAVPSLPPLVPGQEAYYCCWGFFPMGFVAGNVGSVEKEAAPAPAPAPVQPQPVSSSLPNWMPVPAENGANNVTPSPAPAPAPARVTRASASGVPNGVASGSGTTPKKRGRPRNCFGCVVCRVDSPIHLVEEENNVTIIESRFTRPQNC* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01421 356 SMART dnaj_3 66 124 IPR001623 -
Rops9g01421 356 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Rops9g01421 356 PRINTS DnaJ domain signature 104 124 IPR001623 -
Rops9g01421 356 PRINTS DnaJ domain signature 69 87 IPR001623 -
Rops9g01421 356 PRINTS DnaJ domain signature 88 103 IPR001623 -
Rops9g01421 356 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 286 - -
Rops9g01421 356 Gene3D DnaJ domain 55 139 IPR036869 -
Rops9g01421 356 ProSiteProfiles dnaJ domain profile. 67 132 IPR001623 -
Rops9g01421 356 MobiDBLite consensus disorder prediction 261 282 - -
Rops9g01421 356 SUPERFAMILY Chaperone J-domain 61 132 IPR036869 -
Rops9g01421 356 CDD DnaJ 67 121 IPR001623 -
Rops9g01421 356 Pfam DnaJ domain 67 129 IPR001623 -
Rops9g01421 356 MobiDBLite consensus disorder prediction 249 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01421 Rops-Chr9 23425863 23427142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01421 5 320 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 52.280 2.50e-107 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01421 - - gmx:100816918 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01421 9 23425863 23427142 Rops9g01421 9 23425863 23427142 ECH
Rops9g01421 9 23425863 23427142 Rops10g01711 10 32020800 32021763 PCT