Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01408 ATGGAGCCAGCAATGTACGGTCACGCCCAACCCATTAACATGCCCGGACAAATCGGCGCCGGCGAAAGCGACGACGGATCCGGCGCCGACATCGACGGACACCACCACATTCAGTACGAAACCCACGCCCTCGAAGATGGTAGCGGTGGCGGTGTCGTCGAAGATGTTACCTCCGACGCCGTTTACGTTTCTGGCCATAGTGGTGGAGACTCTGAATTAGCTATTCAACGTTGCGACGACTCTAGCCAGCTTACGCTGTCGTTTCGTGGCCAAGTTTATGTTTTCGATTCTGTTACTCCTGATAAGGTTCAAGCGGTGTTGTTACTGTTGGGTGGATGTGAACTATCTCAAGCGGGTTCGCCATGTGTGGATACAGTGCCTCAACAAAATCAGAGGGGTTCAATGGAATATCCTGCAAGATGTAGTCAACCACAGCGAGCAGCCTCATTAAATAGGTTCCGGCAGAAGAGGAAAGAGCGATGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCCCTCAGGATGCACCGTAATAAAGGTCAATTTACTTCAGCTAAGAAACAAGATGGTGCTAACAGTTGGGGTACAGATCAAGAGTCAGGGCAGGATGACAGTCAGTCAGACACCTCATGCACACATTGTGGCATAAGTTCAAAATCGACCCCAATGATGCGGCGAGGACCATCTGGTCCAAGGTCACTTTGCAATGCATGTGGGCTTTTTTGGGCAAATAGGGGTGCTTTGAGAGACCTTTCCAAGAGAAATCAGGAACACTCACTTACACCAGCTGAACAGGTTGAAGGTAATGACCAAGACTGTCGAACTGCCATCCCTGCACATAATAATCTTGCTGCTTTCTCTGAGAGTGATAATCCAACTTTGGTAGCTGAACGTTGA 906 0.4879 MEPAMYGHAQPINMPGQIGAGESDDGSGADIDGHHHIQYETHALEDGSGGGVVEDVTSDAVYVSGHSGGDSELAIQRCDDSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSQAGSPCVDTVPQQNQRGSMEYPARCSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSAKKQDGANSWGTDQESGQDDSQSDTSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNQEHSLTPAEQVEGNDQDCRTAIPAHNNLAAFSESDNPTLVAER* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01408 301 SMART tify_2 77 112 IPR010399 -
Rops9g01408 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 210 262 - -
Rops9g01408 301 MobiDBLite consensus disorder prediction 181 231 - -
Rops9g01408 301 Pfam CCT motif 146 188 IPR010402 GO:0005515
Rops9g01408 301 ProSitePatterns GATA-type zinc finger domain. 214 241 IPR000679 GO:0006355|GO:0043565
Rops9g01408 301 Pfam GATA zinc finger 214 249 IPR000679 GO:0006355|GO:0043565
Rops9g01408 301 ProSiteProfiles GATA-type zinc finger domain profile. 208 267 IPR000679 GO:0006355|GO:0043565
Rops9g01408 301 PANTHER GATA TRANSCRIPTION FACTOR 28 27 278 IPR045280 GO:0006355
Rops9g01408 301 MobiDBLite consensus disorder prediction 187 227 - -
Rops9g01408 301 MobiDBLite consensus disorder prediction 1 33 - -
Rops9g01408 301 ProSiteProfiles Tify domain profile. 77 112 IPR010399 -
Rops9g01408 301 Pfam tify domain 81 111 IPR010399 -
Rops9g01408 301 SMART GATA_3 208 261 IPR000679 GO:0006355|GO:0043565
Rops9g01408 301 Gene3D - 204 264 IPR013088 GO:0006355|GO:0008270
Rops9g01408 301 ProSiteProfiles CCT domain profile. 146 188 IPR010402 GO:0005515
Rops9g01408 301 CDD ZnF_GATA 213 259 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01408 Rops-Chr9 23149921 23155857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01408 51 286 Tify Gene Family AT4G24470 57.500 5.56e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops9g01408 CCT 2.8e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01408 - - pvu:PHAVU_008G182900g 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01408 9 23149921 23155857 Rops9g01408 9 23149921 23155857 ECH
Rops9g01408 9 23149921 23155857 Rops10g01733 10 32390061 32395553 PCT