Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01401 ATGTCCTCACAAGCAGTGCAGTTGCGTATCAAAGACAGTTATGTTGTTATGGACAATGGCATACTACAAGTGTATTTATCCAAACCTGGTGGATTTGTCACTAGAATACAATATAATGTCATTGATAATCTGCTTGAAGCTCTTAACGAAAGAAATGATAGAGGATATTGGGATGTTGTTTGGAGTGAAGCAGGAAGTACAGGAACAACTGGGACATTTGAGAGGATTGTAGGAACAAGCTTCAATGTCATAACGGAAAATGAGGAACAGGTTGAAATCTCATTTACAAGAATGTGGGATCCATCTTTGAAAGGAAAGCAATCACCTCTAAATATCGACAAAAGGTATGTGATGCTTCGTAATGCCTCAGGCTTCTACTCTTATGCCATCTTTGAACACATGAAGGAGTGGCCTAATTTCAACATACCTCAAATCAGGATTGTTTATAAGCTAAGAAAAGACAAGTTTCATTACATGGCCGTGGCGGATAATAGACAAAGGTTCATGCCTCTCCCTGATGATCGATTACCCGGAAGAGGAGAAGAACTAGTTCCTCCAGAAGCAGTTTTGCTCGTACATCCCGTGGAGCCAGAGTTCACAGGAGAGGTGGATGACAAGTATCAGTACTCAAGTGAGAACAAAGATCTTAAGGTCCATGGATGGATAAGTTCAAAATCAGAAACTGATCCAGCCATGGGGTTCTGGGTAATGATACCCAGCAATGAGTTCCGATCTGGTGGTCTTGTTAAACAGAACCTTACTTCCCATGTAGGCCCCATCAGCCTCGCAATGTTTCTTAGTGCCCATTACGCAGGAGAGGATATAGTTCTAAAACTCCAGCCAAATGAGCCATGGAAGAAAGTTTTCGGACCAACTTTCGTCTACCTTAACACTTCGTTGAATGATGAGAACCCACTGAACCTGTGGGAGGACGCCAAACTTCAGATGAACAAGGAAGTTCAAAGTTGGCCCTATGATTTTCCAGCTTCAGAGGATTTTCAGAAGTGTAGCCAACGGGGCAGTGTGTGTGGCACGTTACTAGTTCGAGAAAGGTTCCTAAGTGACGAGTCCATGTTAGCAGAAGGCGCATACGTAGGACTGGCACCCCCAGGAGAAGCTGGATCTTGGCAAAGAGAATGCAAGGGATACCAATTTTGGACTAGAGCAAACGAGGAAGGCTACTTCTCAATCAATAATATACGTAGTGGGGAATACAATCTCTTCGCTTGGGTTCCAGGTTTCATTGGAGAGTATTGGAACAATGTTGTCCTCACCATAACATCAGTCATAAGAACAATGCAACTTGCAGGTTGTGAAATAAACGTTGGAGACATTATTTATGAGCCTCCAAGAGATGGTCCAACATTATGGGAGATAGGAATACCTGATCGCTCTGCCGCTGAGTTTTATATTCCTGATCCTAATCCAAAGTATATAAACAAGCTTTATGTTGACCGTCCAGACAAGTTTAGGCAGTATGGCTTGTGGGAAAGATATGCAGATTTATACCCAAATGAAGATTTGATTTATACAGTTGGTGTTAGTGACTACAGAAAAGATTGGTTCTTTGCACAGGTCACCAGGAAGCAAAAGGATGGTAGTTATCAAGGAACTACATGGCAAATTAAGTTCAACCTTGATAACGTGGAGGCAAGTGGAATCTATAAATTGCGATTGGCTCTTGCAAGTGCAAATGTCTCCGAATTACAGGTTAGAGTAAATGATCTAAAACAAGACCCTCCACTATTTACTACGGGGATAATTGGAAAGGACAATGCAATAGCTAGACATGGAATTCATGGACTCTATTGGCTCTTCAGCATTGATGTGCCAGATCTTCTGTTACTGAAAGGTGTTAATATTATATTTCTAACACAGACTATAGCCACTGACCCCTTGGCCCTCTTTCATGGGATAATGTATGACTATATTCGTTTAGAAGGCCCTGACCCTTTTCTTCCCATAAAAAAATTTAATTTAAATTAG 1986 0.4154 MSSQAVQLRIKDSYVVMDNGILQVYLSKPGGFVTRIQYNVIDNLLEALNERNDRGYWDVVWSEAGSTGTTGTFERIVGTSFNVITENEEQVEISFTRMWDPSLKGKQSPLNIDKRYVMLRNASGFYSYAIFEHMKEWPNFNIPQIRIVYKLRKDKFHYMAVADNRQRFMPLPDDRLPGRGEELVPPEAVLLVHPVEPEFTGEVDDKYQYSSENKDLKVHGWISSKSETDPAMGFWVMIPSNEFRSGGLVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTSLNDENPLNLWEDAKLQMNKEVQSWPYDFPASEDFQKCSQRGSVCGTLLVRERFLSDESMLAEGAYVGLAPPGEAGSWQRECKGYQFWTRANEEGYFSINNIRSGEYNLFAWVPGFIGEYWNNVVLTITSVIRTMQLAGCEINVGDIIYEPPRDGPTLWEIGIPDRSAAEFYIPDPNPKYINKLYVDRPDKFRQYGLWERYADLYPNEDLIYTVGVSDYRKDWFFAQVTRKQKDGSYQGTTWQIKFNLDNVEASGIYKLRLALASANVSELQVRVNDLKQDPPLFTTGIIGKDNAIARHGIHGLYWLFSIDVPDLLLLKGVNIIFLTQTIATDPLALFHGIMYDYIRLEGPDPFLPIKKFNLN* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01401 661 CDD RGL4_C 457 647 - -
Rops9g01401 661 CDD RGL4_N 12 299 - -
Rops9g01401 661 CDD RGL4_M 338 445 IPR029413 -
Rops9g01401 661 Gene3D - 8 282 IPR014718 GO:0030246
Rops9g01401 661 Gene3D - 453 647 - -
Rops9g01401 661 Pfam Polysaccharide lyase family 4, domain II 361 427 IPR029413 -
Rops9g01401 661 Pfam Polysaccharide lyase family 4, domain III 455 646 IPR029411 -
Rops9g01401 661 FunFam Rhamnogalacturonate lyase B 335 442 - -
Rops9g01401 661 SUPERFAMILY Galactose-binding domain-like 452 647 IPR008979 -
Rops9g01401 661 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 649 - -
Rops9g01401 661 Pfam Rhamnogalacturonate lyase family 4 203 IPR010325 -
Rops9g01401 661 SUPERFAMILY Starch-binding domain-like 357 426 IPR013784 GO:0030246
Rops9g01401 661 Coils Coil 559 579 - -
Rops9g01401 661 Gene3D - 336 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01401 Rops-Chr9 23001277 23011122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01401 1 649 Polysaccharide Lyase AT1G09890 62.769 0.0 848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01401 K18195 - gmx:100815677 1177.93