Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01385 ATGGAGTTATATGACCATGGTTTCTTGGAGGAGTTACTAGCTCTAAGAAGAGAAACATGGGACACCAATCCAAGTTCAGAAGAAAACCAACCCTTCTCAAATGGTTTGAGTTTTGACCATTTTGATCAAAACTCTTCTACTTTTCTTCCAAATTCTTCCTCCTTTTACCAAGAAGTTCCTCAAAGTTACAATGGTTACACCTTCAATGAAATCTACAGTTCCTTACTTGATGAATTCTCTGCACCACAAATCACTGACTCATCCTATAACACCCTTGATACTCCACTTAATACCCCTCCATTTCTGGCTCAAGAAGATTATCCATTGTCCATGATGGAAGATGAGGATCCAGGTTTGCTTGGAGAGGAGCTCCATCGTTTGGACCTGCAAACCACATGCAAAATGGAGCCAAGCCAATCACCTGAAATGCCTGTTTTCAACACGGGTACATGTCTTGAAAGAAAGAATCGAGCAAAGAAACTTCAGGGACAGCCCTCAAAGAATCTAATGGCTGAAAGGAGAAGAAGAAAGAGATTAAATGACAGGCTCTCCATGCTAAGATCAATTGTCCCTAAAATAAGTAAGATGGACAGAACATCTATACTTGGAGACACTATTGATTACATGAAAGAACTGTTAGGGAAGATTAATAATTTGAAACAAGAAATTGAACTAGATTCAGACATGGATGGCATTTTCAAGGATGTAAAGCCCAATGAAATCTTAGTGAGAAATTCCCCCAAGTTTGATGTGGATAGGAGGAGTGTCAATACAAGGGTCGAGATCTGTTGTGCAGGGAAACCAGGCTTGTTGCTATCTACAGTGAACACCTTAGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTATCAGTTGTTTCAATGATTTCACTATGCAAGCTTCTTGTTCAGAGGATTTTGAGCAGAAGACAATTCTGAGTTCTGAAGATATAAAGCAAGCACTATTTAGAAGTGCAGGATATGGAGGAAGATGTTTGTGA 999 0.3954 MELYDHGFLEELLALRRETWDTNPSSEENQPFSNGLSFDHFDQNSSTFLPNSSSFYQEVPQSYNGYTFNEIYSSLLDEFSAPQITDSSYNTLDTPLNTPPFLAQEDYPLSMMEDEDPGLLGEELHRLDLQTTCKMEPSQSPEMPVFNTGTCLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLGKINNLKQEIELDSDMDGIFKDVKPNEILVRNSPKFDVDRRSVNTRVEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEDFEQKTILSSEDIKQALFRSAGYGGRCL* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01385 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Rops9g01385 332 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 53 326 - -
Rops9g01385 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 224 IPR036638 GO:0046983
Rops9g01385 332 CDD ACT_UUR-ACR-like 258 299 - -
Rops9g01385 332 Gene3D - 153 227 IPR036638 GO:0046983
Rops9g01385 332 Pfam Helix-loop-helix DNA-binding domain 169 212 IPR011598 GO:0046983
Rops9g01385 332 SMART finulus 169 218 IPR011598 GO:0046983
Rops9g01385 332 Coils Coil 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01385 Rops-Chr9 22730507 22732121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01385 154 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 68.156 3.26e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops9g01385 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01385 - - gmx:100814388 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01385 9 22730507 22732121 Rops9g01385 9 22730507 22732121 ECH