Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01384 ATGTCTCAGCCTTTCCTTGGGATAGGGGATGAGGAAGGTGAAAGCAATGTCACTTTGTTGGTTTCTTCTTCCTCAGCCACTGTGGAAAGTGTGTGTCTTAATGGTTCAAAACTAAAAGAGCACAACTACATGGGATTATCATCGGATTGTTCATCAGTTGATAGCTCAGTTCCACTTCCATCTTTCTCAGATGAGAGCAAAAGTAATCTGAACCTTAAAGCTACAGAACTCAGACTTGGGCTTCCAGGATCACAGTCACCTGAAAGAGATTCAGATCTTTGCTTGAGAAGTTCAACTCAGTTTGATGAAAAGCCTCTTTTTCCTTTGCATCCTGCAATTGATGATCATCATTCCTTATCAAAGCCTTCTGTTTTGCGTAACAAAAGAGGGTTCTCAGATGCCATGAATGAGGGAAAATGGAGGGCTAGCTCCATGCTTGAGAATGTTGGGGATCAACAAGCCAAAGCCAAAGAAATAGCAACATCCAAAGTTGGTCTTGAAGGGCCTCATGGTGTCAATGAAAGTAGACCAAGTCTTGATGGTTCTGCTATTAATAGTAATAGCAGTGCACCAGCTACTAAGACACAGGTTGTTGGTTGGCCTCCTATAAGGTCATTTAGGAAAAATTCATTGACTACTACTTCAAAGAACATTGAAGAAGTTGATGGAAAATTGGGGTCTGGTGCACTGTTTGTGAAGGTCAGCATGGATGGTGCTCCATATTTGAGAAAAGTGGACTTGAAGAATTACACTGCATATACAGAACTATCTTCTGCTCTGGAGAAGATGTTCAGCTGTTTTACCATAGGTCAATGTGGATCTCATGGTAAACTTGGCAAGGAGATGCTGAATGAAACCAAGTTGAAGGATCTGCTTCATGGGTCAGAATTTGTTCTTACTTATGAGGATAGAGATGGTGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATTGATACATGCAAGAGGCTAAGGATCATGAAGAGTTCTGATGCCATTGGTCTAGCACCAAGAGCTGTTGAAAAAAATAAAAGCAGGAACTAG 1050 0.4152 MSQPFLGIGDEEGESNVTLLVSSSSATVESVCLNGSKLKEHNYMGLSSDCSSVDSSVPLPSFSDESKSNLNLKATELRLGLPGSQSPERDSDLCLRSSTQFDEKPLFPLHPAIDDHHSLSKPSVLRNKRGFSDAMNEGKWRASSMLENVGDQQAKAKEIATSKVGLEGPHGVNESRPSLDGSAINSNSSAPATKTQVVGWPPIRSFRKNSLTTTSKNIEEVDGKLGSGALFVKVSMDGAPYLRKVDLKNYTAYTELSSALEKMFSCFTIGQCGSHGKLGKEMLNETKLKDLLHGSEFVLTYEDRDGDWMLVGDVPWEMFIDTCKRLRIMKSSDAIGLAPRAVEKNKSRN* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01384 349 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 70 336 IPR003311 GO:0005634|GO:0006355
Rops9g01384 349 SUPERFAMILY CAD & PB1 domains 227 330 - -
Rops9g01384 349 ProSiteProfiles PB1 domain profile. 229 331 IPR000270 GO:0005515
Rops9g01384 349 Gene3D - 225 343 - -
Rops9g01384 349 Pfam AUX/IAA family 75 340 IPR033389 -
Rops9g01384 349 FunFam Auxin-responsive protein 224 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01384 Rops-Chr9 22658879 22662276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01384 243 331 B3 DNA Binding Superfamily AT1G19220 31.461 1.03e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops9g01384 AUX_IAA 1.6e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01384 K14484 - gmx:100815447 520.39