Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01372 ATGGATACCCAAAGTGTGAGGAAGAGAGTGATCATAAATGAACTTGTTAAGGGTCAAGAAGCTGCTACCAAACTCAAGGTTTTGCTTGAGAATCCCTTTGGAGTTTATGGGTCTCTCTCATCAGAGGAACTTGTGGTCAATGTACTGAGATCTTTCACTGAGGCTCTTTCTATGATAACTTGTTCATCTCAACCCTGTGGTGATCAGAATCTGCTGAGTTCAGGCGAAAATGGGTCGCCGGTGGTTGTTTCCGGTGAGGGTAGGAAGAAATCTTCAATGGATGAAAAGGTTGGAAGAGGCTGCTACAAAAGAAGGAAGAGTGCACAGGCATGGACCAGAGTCTCCTGTACTACCAATGATGATCATGCATGGAGGAAGTATGGACAAAAGGAAATCCTGAACTCTGAATTCCCTAGGAGTTACTTTAGGTGCAGTTACAAGAATGATCAAGGTTGCTTAGCAACCAAACAGGTGCAGCGGACACAAGAGAATCCTGATATGTACAAAACTACATACATTGGCATTCACACATGCAAAGCCACCCTTAAGCCTACACATTTGGTCATAGATTCTAGTACTCATGGGGAACCATTTCCCCTCAATCCTGATTCTGACTCCAAGGTACCAAATGAACAAGATCACCATATTAGCTCACCAAGCCTAACTATAAAACAAGAATATCCCAAACAAGACACTCCAAGTGATGTTACAGATCAAAAGCCTGCCATTGTGCCCTTAAAGATGGAATCTGATAATGCAGATGCTGTGTATTCATGTACAGGATCTCAAGGTCTGGACATGGAGTTTGGGGTGGAATCTGTTCATTTTGGCACTGACTTCCACTTTGATGAAAGTCAGTTGCTTCACTGCTTTGATTAG 879 0.43 MDTQSVRKRVIINELVKGQEAATKLKVLLENPFGVYGSLSSEELVVNVLRSFTEALSMITCSSQPCGDQNLLSSGENGSPVVVSGEGRKKSSMDEKVGRGCYKRRKSAQAWTRVSCTTNDDHAWRKYGQKEILNSEFPRSYFRCSYKNDQGCLATKQVQRTQENPDMYKTTYIGIHTCKATLKPTHLVIDSSTHGEPFPLNPDSDSKVPNEQDHHISSPSLTIKQEYPKQDTPSDVTDQKPAIVPLKMESDNADAVYSCTGSQGLDMEFGVESVHFGTDFHFDESQLLHCFD* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01372 292 MobiDBLite consensus disorder prediction 72 96 - -
Rops9g01372 292 SMART WRKY_cls 118 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g01372 292 MobiDBLite consensus disorder prediction 213 237 - -
Rops9g01372 292 Gene3D WRKY domain 96 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops9g01372 292 SUPERFAMILY WRKY DNA-binding domain 116 179 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops9g01372 292 MobiDBLite consensus disorder prediction 193 239 - -
Rops9g01372 292 Pfam WRKY DNA -binding domain 119 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g01372 292 ProSiteProfiles WRKY domain profile. 119 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g01372 292 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 214 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01372 Rops-Chr9 22464146 22467381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01372 1 291 WRKY Transcription Factor Family AT3G56400 32.899 2.14e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops9g01372 WRKY 1.5e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01372 9 22464146 22467381 Rops9g01372 9 22464146 22467381 ECH
Rops9g01372 9 22464146 22467381 Rops10g02242 10 39976458 39976964 PCT