Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01368 ATGGGTAGAAGAAAAAGTAAACCACATCGATCAGGTGGGATAATTCTAGAAACAAATGCTACTGCTGAAACAGAATTGGGTAAACATAATGTTGTAGAATCAGGGGAAGAAGCAAAGGATGATTCTGGTGACATTGATAAACCTTATTTTGTTGAGGTTGACCGGTCTGGTTGGTTGTCAAGTGAACACCTTGATATTTCTGAAGTTGTTTTAAGGGATTTAAATTTGAGAGAAGGTTTTTCTGGCTTTGAATTGTCTGAGGATTTTTATCAGGATCCCCAGTACTCGTTGAGATTTCGGGTGTGTAATGTCAGTAATGTTCTTGGTCGAATTAAATTAGGCCATTGGCCTGTGTTACCCTATACTGATATTCATCTAGAGTTTGTAAAAAGCGATGCAGTTGACAATATGGAAACATGTACAGTGTTGTTATCTGGTATTTTTGATGGATCTGACGAAGGTGTTTCTGGTCTTGTTCACTTGGCAAGTTTGAAATTTGTTACATTGAGGGCAGTTCTTGGGATTAGGATTTCTGAGGACAGTCCTTCCCTTAGGGTAAGGGTTGAGGTACTAAAGAGTGCCTTCGATGCATGCGAGTCACTTCTCGAGGGTTCTAGACAACTATGGAAAAAGAGTATGATGAATGTCATGTCTTGGCTACGTCCAGAAATAATGACTTCAGAAGTTAGGTATGGGTTTAGTAGCTATATGAAAATGGAAGTTGACCCACAGACAGAGATGGGAGACGACAGTTGCAATGCCAGGAAACATGAGAGGTTTGATCCTGCAGGTTTTTATGAAGCCATTAAGCCTTCAAAGACAGAGCCAATGCTCAAAGATGACATGCCTGAGTTAATTCCTGAACTGAGGCCATATCAACGGCGTGCAGCTTTCTGGATGGTACAACGGGAGAAAGCAATGGGAGAAAGTCAGGGTGAAAGAGAAAGAAATCAATTTCATTCTCCGTTGTGTGTGCCTGTGGATTTTCTGGACACAAGTTCTAAAATGTTTTTCAATCCATTCAGTGGAAATATTTCATTGTGCCCAGAGACTTCTTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTACTTGCTTGCATCTTTGCTCACCGGAGATCAGCATCTGGAAGTGACATACTAATTAATTCAATGGCCCAAGTTAACGGGGACCAAAATTTCACTTTAAAAAGACTCAAAAGAGAGCGTGTGGAGTGCATATGTGGGGCTGTGAGCGAAAGTCTCAAATATCAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCTGATTGTGTTGGTTATTCACCTAAAGGAAAATCACTGAAATCAAAACAAGGAAGTGAAAGCAAGACATTTAAAACTACCACAGCTGTGAGGGATGGGGAATATGTATGTCAGATGTGCTCTGAACTAATTCAAGCTACTGAATCTCCTATTGCCTCTGGTGCCACTCTCATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATACGTCATACACGTTCAGGCTCCTTGAAAACTTGTGTTTATGACGGCGTGCGAGACACATCTTTTTCCGATACATCTCTTATGGATATCAGTGATCTTGCCAGTGCTGACATTGTAATAACTACATATGATGTGCTTAAAGAGGATTTGACCCATGATTCTGATAGACATGAAGGTGATAGGCACTTTTTGAGATTTCAGAAAAGGTATCCAGTTATCCCAACTCTTCTTACCAGAATATACTGGTGGAGGGTTTGTTTGGATGAGGCTCAAATGGTTGAGAGTACTGCTACGGCTGCCACTGAAATGGCTCTGAGACTCCATTCCAAGTATCGTTGGTGCATTACAGGGACCCCAATTCAGCGAAAGCTTGATGACTTATATGGACTTCTAAGATTCCTTAAAGCTAGTCCTTTCAATACATACAGATGGTGGAGTGAAGTTATTCGAGATCCTTATGAGAAGGGAGATATGGGAGCTATGGAGTTTACGCACAGAATTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCAGATGAATTGGACCTTCCCTCCCAAGAGGAGTGCCTCTCTTGGCTTACACTCTCACCAGTAGAAGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCCCACGAAGTTATTGAAAGTTTGAGAAATGATGTTCTTAATAGAAAAGTCCCAGGTTCTGTATCTATGAATGGTTCCTCTGATCCTTTAATCACTCACTCAGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGTTCTGGGTTGCGTTCCCTGCAGCAGTCACCTATGACCATGGAGGAAATACTAATGGTTCTTATAAGCAAGACCAAGGTAGAAGGTGAGGAAGCTCTTAGGAGGTTAGTTGTTGCTCTGAATGGACTTGCGGCAATAGCTATAATACAAAATGATTTTTCTCAAGCTGCATTGCTGTATAATGAAGCTCTTACTTTGGCTGAGGAGCATTCTGAAGATTTCCGTCTTGATCCTTTGCTAAATATTCACATTCATCATAATCTTGCTGAAATACTTCCGCTGGCTGCAAACTTGACTTTGATATTGCCATCCAAAGGAAAGCAGTTCTCTGGAACTTCTGCAGTTAATACGACAAGAAAACATTCTATTATAAAGGTTGATCAAGATCTTATGAAAAGGCAGAAAATAAGTGGCAGCAATGAAGTAAATTCAACAGTGGCTTCTGCAGAACCATCAAATGTTGCATCTAGCCTTTCAGAAAATGACTTAAATGAGGATCGGGAATTTGATAATTTTTCAGCCAGTTCTGTCAAATCTCTGATAGCAGAATGTGAAGATTCAAAACAGAAATATTTATCTGTGTTCAGTTCAAAGCTATCTGCAGCTCAACAGGAGTTTCAACATTCTTACATGCAGGTTTGTAATGCATATCGTGACAGCAGAACTGATCAAAATGCGTTTTGGTGGTTAGAAGCACTTCTTCATGCTGAGCAGAACAAGGATTTGTCAACTGAGTTGATTAGAAAGATTGAGGAGGCCGTCTCAGGAAATTCAAACAATTCAAAATCATCAAGAATAGCTACAAGGTTTCGGAGCATAAGCTCCCTCAAGTATCAAATTCAGACAGGTTTAGATCAGTTAGAGGCTTCTAGGAAAGTGCTACTTGATCGACTGTTAGAAATTGATAAGACAATGGAAAAACCAAAAGATGAAGATATTGAACGTATGGGTAAATGTCAAAATTGTCAACCTAATTGTGATGGTCCCCCGTGCCTTCTGTGTGAACTAGATGAATTGTTTCAGGACTATGAAGCAAGACTCTTTGTTCTTAAGAATGAACGTGGAGGGATAATTTCATCTGCTGAGGAGGCAGTAGATTATCAGAAGAAAACTTTTGCATTGAATCATTTCCTCTCAAAGCTATCACAATCTAATCCCAGTTCAACAGAGTCGGATATTGGTTATGAAGAATTAAAAAAAAGGAATGTTGGACAAAGAGTTGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTTATTCTTGGAGTTATAAAGAACTATTGCAAGGCTCGGTTAGGAAGGGACAGTGTCTCAGCAGCCACCAAGCATTTACATATTTTTGAGGGAATGCGAAAGGAGTTTGCCCATACAAGGTCTTTGGCATTAGCTCAAGCTCAATATCTGCGTGCCCATGATGAAATAAAGATGGCAGTTTCCCGTTTGCACCTAAGGGCAAATGAAAATGATAAATCTCTTGATGCTTTAGGTGAAAATGAATTAGCTGCAGCTAGTTCAGACTTTTCCCATGATAAGTTTATGTCATTGACCTTGTTGTCACAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTGCCATTGGAAACTCCAGATAGTTCTTCATTCACACAAGAGACAACCGCAATGTCAAACACTACAGAAGAGAAAGGTTCACTGATATCTAAAACTGATGAGGAAACATGCCCAGTTTGCCAAGACAAGCTAGGCAATCAGAGAATGGTATTTCAATGTGGGCATGTTACATGCTGTAAATGTTTATTTGCTATGACTGAGCAAAGACTCCAACATAGCAAGATTCATAATTGGGTGATGTGCCCTACTTGTCGACATCATACCGATTTTGGAAACATTGCCTATGCTGTTGATGCACAGAATGAATCTTCCAATCCTTCAATGCTGCATACAATTGACAGCTGTGAAAAATATGAAGCATCCATTAGGGTTAAAGGCTCATATGGAACTAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGATAAAGGCTACAGATCAGAAAGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTAGAACACGGCTTTGCCGCCAATGACATCACCTTCATCCGGATGAAAGGAGGCAGAAAAGCACACGTTGCTATAAGTCAATTTAGAGGGAAACAGAATGGCACAAAAGGAACACCAAAATCTATTCAGGTGTTATTGCTTTTAATCCAACATGGAGCCAATGGCCTCAATCTTTTGGAAGCACAGCATGTGGTCCTTGTAGAGCCATTACTCAATCCAGCTGCTGAAGCACAAGCCATCAGTCGTGTACATCGAATTGGACAACAAAATAAGACCCTCATTCATCGTTTTATTGTAAAAGATACAGTTGAAGAGAGCATATACAAATTGAACAGAAGCAGGAGCAATCATTCATTCATTAGTGGGAACACAAAAAATCAAGATCAACCTGTTTTAACCCTTAAGGATGTGGAATCCTTACTAGCAAGAGCACCACTAACTATGCCAGAAAGTGATGAAAATCCTAATGCAAATACAAATCTAAGGCACTTGCCACCATCAATGGCCGCTGCTATAGCTGCTGAGAGGAGACTTAATGAGCAAAGGACATGA 5004 0.4035 MGRRKSKPHRSGGIILETNATAETELGKHNVVESGEEAKDDSGDIDKPYFVEVDRSGWLSSEHLDISEVVLRDLNLREGFSGFELSEDFYQDPQYSLRFRVCNVSNVLGRIKLGHWPVLPYTDIHLEFVKSDAVDNMETCTVLLSGIFDGSDEGVSGLVHLASLKFVTLRAVLGIRISEDSPSLRVRVEVLKSAFDACESLLEGSRQLWKKSMMNVMSWLRPEIMTSEVRYGFSSYMKMEVDPQTEMGDDSCNARKHERFDPAGFYEAIKPSKTEPMLKDDMPELIPELRPYQRRAAFWMVQREKAMGESQGERERNQFHSPLCVPVDFLDTSSKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRRSASGSDILINSMAQVNGDQNFTLKRLKRERVECICGAVSESLKYQGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGSESKTFKTTTAVRDGEYVCQMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTRSGSLKTCVYDGVRDTSFSDTSLMDISDLASADIVITTYDVLKEDLTHDSDRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESTATAATEMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLKASPFNTYRWWSEVIRDPYEKGDMGAMEFTHRIFKQIMWRSSKEHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDVLNRKVPGSVSMNGSSDPLITHSEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKVEGEEALRRLVVALNGLAAIAIIQNDFSQAALLYNEALTLAEEHSEDFRLDPLLNIHIHHNLAEILPLAANLTLILPSKGKQFSGTSAVNTTRKHSIIKVDQDLMKRQKISGSNEVNSTVASAEPSNVASSLSENDLNEDREFDNFSASSVKSLIAECEDSKQKYLSVFSSKLSAAQQEFQHSYMQVCNAYRDSRTDQNAFWWLEALLHAEQNKDLSTELIRKIEEAVSGNSNNSKSSRIATRFRSISSLKYQIQTGLDQLEASRKVLLDRLLEIDKTMEKPKDEDIERMGKCQNCQPNCDGPPCLLCELDELFQDYEARLFVLKNERGGIISSAEEAVDYQKKTFALNHFLSKLSQSNPSSTESDIGYEELKKRNVGQRVVVSRSASELELILGVIKNYCKARLGRDSVSAATKHLHIFEGMRKEFAHTRSLALAQAQYLRAHDEIKMAVSRLHLRANENDKSLDALGENELAAASSDFSHDKFMSLTLLSQIKGKLRYLKGLVQSKQKLPLETPDSSSFTQETTAMSNTTEEKGSLISKTDEETCPVCQDKLGNQRMVFQCGHVTCCKCLFAMTEQRLQHSKIHNWVMCPTCRHHTDFGNIAYAVDAQNESSNPSMLHTIDSCEKYEASIRVKGSYGTKIEAVTRRILWIKATDQKAKVLVFSSWNDVLDVLEHGFAANDITFIRMKGGRKAHVAISQFRGKQNGTKGTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQQNKTLIHRFIVKDTVEESIYKLNRSRSNHSFISGNTKNQDQPVLTLKDVESLLARAPLTMPESDENPNANTNLRHLPPSMAAAIAAERRLNEQRT* 1668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01368 1667 ProSiteProfiles Zinc finger RING-type profile. 1358 1406 IPR001841 -
Rops9g01368 1667 Pfam SNF2-related domain 292 784 IPR000330 GO:0005524|GO:0140658
Rops9g01368 1667 CDD PHD_TCF19_like 416 481 - -
Rops9g01368 1667 CDD SF2_C_SNF 1449 1582 - -
Rops9g01368 1667 Gene3D - 1420 1655 IPR027417 -
Rops9g01368 1667 MobiDBLite consensus disorder prediction 1324 1348 - -
Rops9g01368 1667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 1622 IPR027417 -
Rops9g01368 1667 SMART ultradead3 285 658 IPR014001 -
Rops9g01368 1667 Coils Coil 1655 1667 - -
Rops9g01368 1667 Pfam Helicase conserved C-terminal domain 1454 1571 IPR001650 -
Rops9g01368 1667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 269 687 IPR027417 -
Rops9g01368 1667 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1455 1622 IPR001650 -
Rops9g01368 1667 SMART helicmild6 1483 1571 IPR001650 -
Rops9g01368 1667 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Rops9g01368 1667 MobiDBLite consensus disorder prediction 926 945 - -
Rops9g01368 1667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1339 1419 IPR013083 -
Rops9g01368 1667 SUPERFAMILY RING/U-box 1353 1410 - -
Rops9g01368 1667 CDD DEXQc_SHPRH 289 688 - -
Rops9g01368 1667 Gene3D - 466 709 IPR038718 -
Rops9g01368 1667 Gene3D - 352 412 IPR038718 -
Rops9g01368 1667 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 34 1666 - -
Rops9g01368 1667 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
Rops9g01368 1667 SMART ring_2 1358 1405 IPR001841 -
Rops9g01368 1667 Pfam PHD-finger 415 483 IPR019787 -
Rops9g01368 1667 SMART PHD_3 414 482 IPR001965 -
Rops9g01368 1667 MobiDBLite consensus disorder prediction 1324 1347 - -
Rops9g01368 1667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 458 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01368 Rops-Chr9 22397409 22428540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01368 489 782 RAD5 or RAD16-like Gene Family AT5G22750 31.438 1.36e-36 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops9g01368 SNF2_N 4e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01368 K15710 - gmx:100776659 2910.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01368 9 22397409 22428540 Rops9g01368 9 22397409 22428540 ECH