Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01358 ATGGGGAGGAGACCTGCAAGGTGTTATCGTCAAATTAAAAACAAGCCATACCCCAAGTCACGGTTTTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGTATGAAAAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTCCATCTGGTTAGTTGGGAGAAGGAAAATGTTTCAAGTGAGGCACTGGAAGCTGCTAGGATTGCTTGCAACAAATATATGTCAAAATTCGCTGGAAAGGATGCATTCCACTTGAGAGTCAGGGTACATCCATTCCATGTTCTTAGGATCAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTCCAGACTGGAATGAGAGGAGCATTTGGAAAGCCACAGGGTACATGTGCTAGAGTGGCTATTGGGCAGGTCCTCCTTTCAGTTCGCTGCAAGGACAGCAACAGCCATCATGCACAGGAGGCCCTCCGTCGTGCCAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGATTCACCAAGTTTAGCCGTACTGATTATCTGAAGTTCAAGTCAGAGAAGAGGATTATGCCTGATGGAGTACATGCAAAGCTTCTTGGGTGCCATGGACCATTGGCTAACCGTCAACCTGGAAGAGCTTTTTTGCCTCCTAGCGCTACTGCTTAG 669 0.4649 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKFKSEKRIMPDGVHAKLLGCHGPLANRQPGRAFLPPSATA* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01358 222 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Rops9g01358 222 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Rops9g01358 222 Gene3D Ribosomal protein L10e/L16 1 215 IPR036920 GO:0003735|GO:0005840|GO:0006412
Rops9g01358 222 PANTHER 60S RIBOSOMAL PROTEIN L10 1 213 IPR001197 GO:0003735|GO:0005840|GO:0006412
Rops9g01358 222 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Rops9g01358 222 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Rops9g01358 222 FunFam 60S ribosomal protein L10 1 206 - -
Rops9g01358 222 NCBIfam 50S ribosomal protein L16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Rops9g01358 222 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01358 Rops-Chr9 22281748 22283983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01358 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.909 4.53e-143 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01358 K02866 - gmx:100305619 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01358 9 22281748 22283983 Rops10g02231 10 39856461 39858572 PCT