Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01356 ATGGAAACTTTGGATGGTAATTCAGACCAATACGCCACCGTTTCATCTAATTCACCATCATCATCTTCTGGGGGTGTTGACAGTAATGATAACAATGGTAACAGTGATAACAGTGTTGGTAGTCTAACCTGGTATGGGATGAGGTTACCTTCTGTTAGCCCTTTACGTTCCCCACTTTCCCTTTTGTTGGATTACTATGGCATTCTAAGATCAAGCAATGATTCTGAGGGTGTGATTGTCAACAATGGAGTTCCCAATTCGGAATTACGGTCTCAGATTCAAATTCAACCTCTTAATGATGGTGCTGCTGATGCTGGGAACAGTGCAGGGGAAGTCGCAATAAGGATAATTGGAGGTGGAGAGCATGATCAGAATCAGCTTAGAGAAGTGGGGTATGATGATTGTGGTGATCTGATTATGGGTGAGAGAGGTGGAATGTCTGCATTGGATGATGATGCTGAGGGTAGTCGTGGTGAAATTGCTGCCAGTGAGAGGGTTCCTCTGGTGTCTTCACCTTCGTCTTCGTCATTGGCTGGTAGTAGTGGACAGGTTGATGGTGGTGATGCTGGGAATGAGATAGAGAGTAACAGCAGGGATTCCTCATCCTATCAGAGGTATGATATTCAGCAGATTGCCAAGTGGATTGAGCAGATTCTTCCTTTCTCACTGTTGTTGTTGGTTGTTTTCATCCGACAGCATTTGCAAGGTTTCTTTGTCACCATTTGGATATCAGCTGTGATGTTCAAATCAAATGAAATTGTTAAGAAGCAGACAGCTTTAAAGGGAGATAGGAAAGTTTCTGTTCTTGTCGGTATCTCTTTTGCTTTCATTCTTCATGTGTTCTGCATTTACTGGTGGTACCGAAATGATGATCTTTTATATCCACTGGTCATGCTTCCTCCAAGACCAACACCTTTCTGGCATGCAATATTCATCATCTTGGTCAATGATACATTGATGCGACAAGCTGCAATGACTTTCAAGTGTTTCCTGCTTATATATTACAAAAATGGCAAAGGTCACAACTTCCGTCGGCAGGCTCAAATGTTAACTCTGGTTGAGTACACACTGCTGTTGTATCGTGCCTTGCTGCCAGCACCGGTTTGGTACCGGTTTTTCTTAAACAGGGATTATGGTAGTCTCTTTTCATCACTCACCACAGGGTTGTATTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGGTCCAATGTTTCATTTCTGCCTTGAAAGCATTATCAAGAAAGGAAGTTCATTATGGGGTTCATGCCACAATGGAACAGGTTAATGCTACTGGCGACCTGTGCGCTATATGCCAGGAGAAGATGCATGCCCCTATCTTGTTGCGCTGTAAACACATTTTCTGTGAGGAGTGTGTATCAGAGTGGTTTGAGAGAGAAAGGACTTGCCCACTATGTAGAGCATTGGTTAAACCTGCTGATCTTCGTACCTTTGGAGATGGATCAACAAGTCTCTTTTTCCAGTTGTTTTAA 1491 0.4286 METLDGNSDQYATVSSNSPSSSSGGVDSNDNNGNSDNSVGSLTWYGMRLPSVSPLRSPLSLLLDYYGILRSSNDSEGVIVNNGVPNSELRSQIQIQPLNDGAADAGNSAGEVAIRIIGGGEHDQNQLREVGYDDCGDLIMGERGGMSALDDDAEGSRGEIAASERVPLVSSPSSSSLAGSSGQVDGGDAGNEIESNSRDSSSYQRYDIQQIAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSVLVGISFAFILHVFCIYWWYRNDDLLYPLVMLPPRPTPFWHAIFIILVNDTLMRQAAMTFKCFLLIYYKNGKGHNFRRQAQMLTLVEYTLLLYRALLPAPVWYRFFLNRDYGSLFSSLTTGLYLTFKLTSVVEKVQCFISALKALSRKEVHYGVHATMEQVNATGDLCAICQEKMHAPILLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01356 496 SUPERFAMILY RING/U-box 425 478 - -
Rops9g01356 496 MobiDBLite consensus disorder prediction 162 198 - -
Rops9g01356 496 Pfam Zinc finger, C3HC4 type (RING finger) 433 476 - -
Rops9g01356 496 CDD RING-HC_RNFT1-like 433 473 - -
Rops9g01356 496 ProSiteProfiles Zinc finger RING-type profile. 435 473 IPR001841 -
Rops9g01356 496 SMART ring_2 435 472 IPR001841 -
Rops9g01356 496 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 25 496 IPR044235 GO:0061630|GO:1904294
Rops9g01356 496 ProSitePatterns Zinc finger RING-type signature. 450 459 IPR017907 -
Rops9g01356 496 MobiDBLite consensus disorder prediction 167 182 - -
Rops9g01356 496 MobiDBLite consensus disorder prediction 1 35 - -
Rops9g01356 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 483 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01356 Rops-Chr9 22263892 22272550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01356 55 496 C3H Transcription Factor Family AT5G01960 63.193 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01356 - K22379 gmx:100816630 597.816