Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01333 ATGCCTATTCTAACATTTGGTCATTCTAAGTTGAGTGCTACCCTAGCTCTTAGGAGGATGGGGTTGATTACGAAGCTTCAGTATTCTGTTGCTGATAGAACATTGAATTATAGTTCTGTGGATTCGCCGGTGTCTGAACGGGACTCTCGTAGAGTGCATAGGAAGAGGGGAGGCCCCTCATTGTTATATGTTCGTCCTAGTTTATCAGATATGAAGAAAGATAAGGTGGCAATGCGTGAAAAGGTTTATGAGTTCTTGAGGGGAATTGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTGACAGTTGATGTTATGAGGGAGAGAGTAGATTTTCTTCACAGCTTGGGGCTTACAATTGAGGACATTAACAACTATCCACTTGTTCTTGGCTGCAGTGTCAAGAAGAATATGATTCCTGTGCTTGATTACCTTGGTAAATTGGGAGTCAGGAAATCCACGTTCACACAGTTCTTGCAGAGATACCCGCAAGTGCTCCATGCTAGTGTGGTTGTGGATCTTGTACCGGTTGTCAAGTATCTTCAGGGGATGGATATCAAGCCTAATGATATTCCTCGTGTTCTTGAGAGGTACCCTGAAGTGCTAGGATTCAAACTTGAGGGAACCATGAGCACATCAGTTGCTTATTTGATTGGAATTGGTGTAGGAAGAAGAGAAATTGGAGGTGTCTTAACTAGATATCCAGAGATTTTGGGGATGCGAGTTGGTAGACTCATCAAACCTTTTGTGGAATATCTGGAGAGCTTGGGAATTCCGAGGCTAGCCATTGCTAGACTGATAGAGAAACGACCTTATATTCTTGGATTTGATCTGAACGAAAAGGTGAAACCAAATGTCAAATCCCTTGATGAGTTTAATGTTAGGCGAACATCACTTCCCTCTATGATCGCTCTGTATCCCGACATAATTGGAACTGACTTAAGGCCAAAGCTTGTCAATCAGAGAAGTGTACTCAATTCTGCACTTGATTTGGATCCTGAGGATTTTGGCCGAATTGTTGAGAAGATGCCACAAGTAGTTAGCCTCAGTAGTGGACCTATGTTGAAGCATGTTGGTTTTCTTAAGGATTGTGGGTTTTCTGTGCAGCAAATGAGGAAGATGATTGTTGGATGCCCTCAACTACTTGCTTTAAACATTGACATCATGAAACTTAGCTTTGATTACTTCCAAATGGAGATGGAAAGGCCTTTGGAAGACTTGGTTAATTTCCCAGCATTCTTCACTTATGGTCTGGAGTCAACTATAAAACCTAGGCATAGGATGATTGCCAAGAAAGGACTGAAGTGTTCTCTGGCATGGATGCTTAATTGTTCTAATGAGAAATTTGAGCAACGAATGGAATATGACACCATTGACATGGAAGAGATGGAAATGGAACCATCATTTGACATGAATTCATTGATGCAACCAAGGAGTGATGAATCAGATACGGATTATGAAGACAGTGATGTTGATAATGAGTAA 1491 0.4158 MPILTFGHSKLSATLALRRMGLITKLQYSVADRTLNYSSVDSPVSERDSRRVHRKRGGPSLLYVRPSLSDMKKDKVAMREKVYEFLRGIGIVPDELDGLELPVTVDVMRERVDFLHSLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTQFLQRYPQVLHASVVVDLVPVVKYLQGMDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLIGIGVGRREIGGVLTRYPEILGMRVGRLIKPFVEYLESLGIPRLAIARLIEKRPYILGFDLNEKVKPNVKSLDEFNVRRTSLPSMIALYPDIIGTDLRPKLVNQRSVLNSALDLDPEDFGRIVEKMPQVVSLSSGPMLKHVGFLKDCGFSVQQMRKMIVGCPQLLALNIDIMKLSFDYFQMEMERPLEDLVNFPAFFTYGLESTIKPRHRMIAKKGLKCSLAWMLNCSNEKFEQRMEYDTIDMEEMEMEPSFDMNSLMQPRSDESDTDYEDSDVDNE* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01333 496 FunFam Transcription termination factor mterf4, chloroplastic 108 245 - -
Rops9g01333 496 FunFam Transcription termination factor MTERF4, chloroplastic 246 460 - -
Rops9g01333 496 Pfam mTERF 144 452 IPR003690 GO:0003690|GO:0006355
Rops9g01333 496 MobiDBLite consensus disorder prediction 468 496 - -
Rops9g01333 496 PANTHER CGI-12 PROTEIN-RELATED 143 454 IPR003690 GO:0003690|GO:0006355
Rops9g01333 496 Gene3D Transcription termination factor 3, mitochondrial 110 247 IPR038538 -
Rops9g01333 496 Gene3D Transcription termination factor 3, mitochondrial 248 461 IPR038538 -
Rops9g01333 496 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Rops9g01333 496 SMART mt_12 158 189 IPR003690 GO:0003690|GO:0006355
Rops9g01333 496 SMART mt_12 374 405 IPR003690 GO:0003690|GO:0006355
Rops9g01333 496 SMART mt_12 59 92 IPR003690 GO:0003690|GO:0006355
Rops9g01333 496 SMART mt_12 194 225 IPR003690 GO:0003690|GO:0006355
Rops9g01333 496 SMART mt_12 302 334 IPR003690 GO:0003690|GO:0006355
Rops9g01333 496 SMART mt_12 406 437 IPR003690 GO:0003690|GO:0006355
Rops9g01333 496 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
Rops9g01333 496 SMART mt_12 230 261 IPR003690 GO:0003690|GO:0006355
Rops9g01333 496 SMART mt_12 339 369 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01333 Rops-Chr9 22064108 22066326 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops9g01333 mTERF 3.8e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01333 K15032 - gmx:100785223 831.632