Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01332 ATGGGTGCCGTCGATTGTATTGCGCCGCCGCGGACGGAGGAGATGGCGGTGCTGTCTCTGAACACGTTACCGCTGGGTTTCCGATTCCGACCAACCGACGAGGAACTCATCGATTACTACCTGCGCTCAAAGATCAACGGGAATGGTGATGATGTTTGGGTTATCAGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGATTTACCTGATTTGTCAGTGGTACGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGATCGTAAGTACCCAAATGGGCACAGGGTGAACCGAGCAACTAGTCATGGGTATTGGAAGGCAACAGGGAAGGATCGAAAGATTAAGTCTGGTTCTACCTTGATTGGAATGAAGAAGACTCTAGTTTTCTACACTGGTCGTGCTCCTAAAGGGAAGAGGACTTATTGGGTTATGCATGAGTACAGGCCTACACTGAAGGAGCTTGATGGTACCAACCCTGGACAGAATCCATATGTCCTTTGTCGCTTATTTAAGAAACAAGATGAAAGTCTTGAAGGTTCCAACGGTGATGAAGTGGAGCAGACTGCTTCAACTCCTACCACTGCCAATTACTCTCCAGAAGAAATACAATCTGATCCAACTCTGGTTCCTGTATCTTCCTCACAGGCCACAGAAGATGATAAGCACCAAGCAGTTATAACTGAGAACTCCGAGGAAGCAATATCCAACATTATAACCCCAGTTGATTGCCATAGCAATGCGTATTATGCTCATGATACACCAAATCAAACTGTAGATCCAGCTGCAGAGGAGGTACAGGCATTGAACTTGGACTTATTTTATGACCCAATAAGTGAGCAATTGGATGACAAATTATTCTCCCCAGTCCATGCGCATTTTCCAGCAGACTTTTATTACCACACTACCAATGAATTGCAACTTCAGTGTGGTACTGATGAGACTAATGTTTCGGACTTTTTCAACTCGGTTGTTAATTGGGATGAGTTCTCCCATGAGGAGTCCAGCAGTCTAGAGCTGAACCCAACCTTGCTTAATGTTAAGGACAATGGATCAGGCAGTGACTCAGATGTGGAAATGGCCAATATGATGCATCTGCAACTGCAAACATTACATGCTGATTATCCCAAGGAGGCAATTGAGCAAAAGAGCAATGAAGGATCGTTTCAGAACAATTCCCAGATGGCTTTTTCAACTGATGTTAGTAGTGTGGTCAATGATTATGAGCAATCAAGAAACTTTGATGCAGTTGTCCATGGTGGTGATACTGGAATCAGGATAAGGACTCGACAAGGAAGAAATGAACAGCCAAACATTAACCCAATGATACCATCTCAAGGTATTGCACCAAGGAGAATACGATTGGGAGAAATTGTTATGCGTCCGCTTGGTTCCAACAAGAAGGCCGAAGATGGGAGTTGCGCACCAGAAGACCATAATTCAAAAACCATCATTGCTGAGGAGAGGAAAGCTTCAGAAAACCATGCTGCTGGTGAGAGTGCTGCTGTCACTAGTGATGTGGATGAACCAGAGAAGACATCTCCTGAGTCAGTTGACACTAGAAAGATTTCTCAGCAACATGCTGCAACTGTGGAATCAAAAAATTTTTTATTGGGCAGAAGGGGCCGTTACACATCAAAGGTTTCCCCCAATCTTGCCATGTGGTTTTCTGTGTTTGCAGTTTCCGCCATTGTACTGGCCTCACTAGTATTGCTTGTTAATATAAGGGATTTCAAGGTTACAAATATGGAGAGAGACATGCATTGTGTCACTGAAGAATCCCAAGTTGGGAATACAGATGAGATAAATCGAGTGGTGTCGCAAGTGAGAGAGTTGACAAATTCTGGATCTCAATGGATTCACATGGAATCCAACTACAAGCGAGGTGGAGGAAGAGATGTGGGAGGGTTTTATAAAGATTTGTCAGTGGTACGGAACAAGGATCCAGAGGACTGCAAGTACCCAAATGGGCACTGGTTGAACCGAGCTACCAGTCATGGGTATTGGAAGGCAATGGGAAAGGATCGCAAGATCAAGTCTGGCTCCACCTTGATTGGAATGAAGAAGACTCTAGTCTTATATGCTGATCGTGCTCCCGAGGGGAAGAGGACCAATTGGGTTATGCACGAGTACAGGCCTACCCTGAAGGTGCTTGATGGTACCAATCCTGGACAGAACGATGATGAAGTAGAGCAGACTGCTTCAACTCCTACCACTTCCAATTACTCTTTAGAAGAAATACAATCGGATCCAACTCTGGTTCCTGTATCTTCCTCACAGGCTGCAGAAGATGATAGGCACCTAGCAGTTATCACTGAGAACTCTGAGGAAGCAATGTCCAACATTATAACCCCAGTTGATTGCCATAGCAACAGATGTGATGCTCATGCGCACCAAATCAAATTCATCTGTAAGCATTACATGCTGATTATCCTAAGGAGGCGATTGAGCAAGAGCAATGAAGGATCATTTCAGAACTATTCCCAGATGGCTTTCTCTACTGATGTTAGTATGGGCCAAGTGTCCAATGTGGTCAATGATTTTGAGCAATTGAGAAACTTTGAGACGATTATTCATGGTGGTGGTACTGGAATCAGGATAATGACTCAACAAGAGGAGGAAGATGGTTAG 2631 0.4458 MGAVDCIAPPRTEEMAVLSLNTLPLGFRFRPTDEELIDYYLRSKINGNGDDVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRVNRATSHGYWKATGKDRKIKSGSTLIGMKKTLVFYTGRAPKGKRTYWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKQDESLEGSNGDEVEQTASTPTTANYSPEEIQSDPTLVPVSSSQATEDDKHQAVITENSEEAISNIITPVDCHSNAYYAHDTPNQTVDPAAEEVQALNLDLFYDPISEQLDDKLFSPVHAHFPADFYYHTTNELQLQCGTDETNVSDFFNSVVNWDEFSHEESSSLELNPTLLNVKDNGSGSDSDVEMANMMHLQLQTLHADYPKEAIEQKSNEGSFQNNSQMAFSTDVSSVVNDYEQSRNFDAVVHGGDTGIRIRTRQGRNEQPNINPMIPSQGIAPRRIRLGEIVMRPLGSNKKAEDGSCAPEDHNSKTIIAEERKASENHAAGESAAVTSDVDEPEKTSPESVDTRKISQQHAATVESKNFLLGRRGRYTSKVSPNLAMWFSVFAVSAIVLASLVLLVNIRDFKVTNMERDMHCVTEESQVGNTDEINRVVSQVRELTNSGSQWIHMESNYKRGGGRDVGGFYKDLSVVRNKDPEDCKYPNGHWLNRATSHGYWKAMGKDRKIKSGSTLIGMKKTLVLYADRAPEGKRTNWVMHEYRPTLKVLDGTNPGQNDDEVEQTASTPTTSNYSLEEIQSDPTLVPVSSSQAAEDDRHLAVITENSEEAMSNIITPVDCHSNRCDAHAHQIKFICKHYMLIILRRRLSKSNEGSFQNYSQMAFSTDVSMGQVSNVVNDFEQLRNFETIIHGGGTGIRIMTQQEEEDG* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01332 876 MobiDBLite consensus disorder prediction 177 220 - -
Rops9g01332 876 ProSiteProfiles NAC domain profile. 572 750 IPR003441 GO:0003677|GO:0006355
Rops9g01332 876 MobiDBLite consensus disorder prediction 183 220 - -
Rops9g01332 876 Pfam No apical meristem (NAM) protein 24 149 IPR003441 GO:0003677|GO:0006355
Rops9g01332 876 Pfam No apical meristem (NAM) protein 650 712 IPR003441 GO:0003677|GO:0006355
Rops9g01332 876 MobiDBLite consensus disorder prediction 489 526 - -
Rops9g01332 876 MobiDBLite consensus disorder prediction 717 742 - -
Rops9g01332 876 SUPERFAMILY NAC domain 15 173 IPR036093 GO:0003677|GO:0006355
Rops9g01332 876 SUPERFAMILY NAC domain 649 718 IPR036093 GO:0003677|GO:0006355
Rops9g01332 876 FunFam Nac domain-containing protein 86 32 176 - -
Rops9g01332 876 ProSiteProfiles NAC domain profile. 23 173 IPR003441 GO:0003677|GO:0006355
Rops9g01332 876 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 650 725 - -
Rops9g01332 876 Gene3D NAC domain 647 751 IPR036093 GO:0003677|GO:0006355
Rops9g01332 876 Gene3D NAC domain 32 177 IPR036093 GO:0003677|GO:0006355
Rops9g01332 876 MobiDBLite consensus disorder prediction 719 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01332 Rops-Chr9 22034517 22048779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01332 641 726 NAC Transcription Factor Family AT4G35580 68.817 1.63e-33 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops9g01332 NAM 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01332 - - gmx:100778903 838.565