Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01327 ATGGGAGAGGGAGGAGAGAGTGTAATGGAAGCTGAAGCTGAAGCAAGTGAGACAACAACAATAACAACATGGAACAAACATAGCCAGATAGTGCAATTGTCGGAGAAACTAATGAATGGAAACCTTAACACAAGGATTGAAGCTGCAAGAGAAATCAGAAAACTCGTTCGCAAATCATCGTCTTCCAAAACACGCTCCAAGCTTGCAGCTGCGGGTGTAATTCAACCCCTTATCTTCATGCTTTCTTCTTCTAACCTCGATGCTCGTGAATCCTCTCTCCTCGCTCTTCTCAACCTTGCTGTTCGCAATGAACGAAACAAGATCAAAATAGTGACAGCTGGTGCCATGCCTCCTCTGGTGGAGTTCCTCAAGATGCAAAACAGTAGTATACGAGAATTAGCTACAGCAGCAATCTTGACACTCTCAGCTGCTGCACCCAACAAGCCCATTATTGCTGCTTCTGGAGCTGCACCTCTCCTTGTTCAGATTCTCAAATCTGGAAGTGTTCAAGGCAAAGTTGATGCTGTCACAGCCCTCCATAATCTTTCCACTAGCATTGAGAATTCCACTGAACTTCTTGATGCTAGTGCTGTTTCCCCTCTCATCAACCTCCTTAAAGAATGCAGGAAGTATTCCAAGTTTGCAGAAAAAGCTACAGCACTACTTGAAATCCTTTCCAACTCCGAAGAGGGACGAATCGCAATCACAATTGCAGATGGTGGAATTTTAACCCTGGTAGAGACAGTTGAAGATGGATCACTTGTCAGCACCGAACATGCTGTTGGAACATTGCTATCATTATGTCTAAGCTGCCGCGATAAATACCGGGAACTGATTCTTAAAGAAGGAGCAATTCCAGGTCTGTTAAGACTGACAGTGGAGGGCACAGCTGAAGCTCAAGAAAGAGCGCGTGTACTTCTGGATTTGCTCAGAGATTCTCCCCAAGAAAAAAGACTAGCCTCTTCAGTTTTGGAGAAAATTGTTTATGACATTGCTGAAAGGGTTGATGGAGTAGATAAAGCTGCTGAAACTGCCAAAAGATTGTTGCAAGATATGGTTCAAAGGAGTATGGAACACAGCATGAACTGCATCCAGCATAGGGCTGCATCATGTACTCCTTCTGTGATTCCATCCACTTGA 1140 0.443 MGEGGESVMEAEAEASETTTITTWNKHSQIVQLSEKLMNGNLNTRIEAAREIRKLVRKSSSSKTRSKLAAAGVIQPLIFMLSSSNLDARESSLLALLNLAVRNERNKIKIVTAGAMPPLVEFLKMQNSSIRELATAAILTLSAAAPNKPIIAASGAAPLLVQILKSGSVQGKVDAVTALHNLSTSIENSTELLDASAVSPLINLLKECRKYSKFAEKATALLEILSNSEEGRIAITIADGGILTLVETVEDGSLVSTEHAVGTLLSLCLSCRDKYRELILKEGAIPGLLRLTVEGTAEAQERARVLLDLLRDSPQEKRLASSVLEKIVYDIAERVDGVDKAAETAKRLLQDMVQRSMEHSMNCIQHRAASCTPSVIPST* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01327 379 Gene3D - 12 375 IPR011989 -
Rops9g01327 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 114 156 IPR000225 GO:0005515
Rops9g01327 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 72 114 IPR000225 GO:0005515
Rops9g01327 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 240 IPR000225 GO:0005515
Rops9g01327 379 PANTHER U BOX DOMAIN-CONTAINING 28 313 - -
Rops9g01327 379 SMART arm_5 144 184 IPR000225 GO:0005515
Rops9g01327 379 SMART arm_5 185 227 IPR000225 GO:0005515
Rops9g01327 379 SMART arm_5 61 101 IPR000225 GO:0005515
Rops9g01327 379 SMART arm_5 228 269 IPR000225 GO:0005515
Rops9g01327 379 SMART arm_5 102 143 IPR000225 GO:0005515
Rops9g01327 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 155 197 IPR000225 GO:0005515
Rops9g01327 379 FunFam U-box domain-containing protein 4 6 370 - -
Rops9g01327 379 Pfam Armadillo/beta-catenin-like repeat 103 142 IPR000225 GO:0005515
Rops9g01327 379 Pfam Armadillo/beta-catenin-like repeat 146 183 IPR000225 GO:0005515
Rops9g01327 379 SUPERFAMILY ARM repeat 32 329 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01327 Rops-Chr9 21893066 21898444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01327 17 312 U-box Gene Family AT3G54790 39.057 6.77e-41 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01327 K08332 - gmx:100782472 580.482