Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01324 ATGGGTCTCTCAAGTCTCCCAGCACCATCTGAAGGAGTATTATGTGTACTTCTGGTGAACACTGTATTGTCAATATCCATATTCAAAGGCATTGTTAGGACAATTCTACACATTGTTGGTATCCATCTTTCATCGTCCTCTACTTCGTCACCTTCACCAGATGCCTCACAAAACCCACCTGAGTCATTTGAATTCCATCTTAGTCCCTCTGAGAGTTACATTGAAGAGTTTAGAAGCAGGACACCAACACTTAGGTTTGATAGTTTGTGTTGCTGTAAACTACCTGAACATGATTGTTCTGTATGTCTCACTCAGTTTGAACCAGAATCAGAGATAAACCGCTTATCTTGTGGCCATCTCTTCCATAAAGGATGCTTGGAGAAGTGGTTGGACTACTGGAACATTACATGCCCTCTTTGCAGAACTCCCTTAATGCCTGAAGATGACACTTCTTGCTTTTAG 462 0.4177 MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLSSSSTSSPSPDASQNPPESFEFHLSPSESYIEEFRSRTPTLRFDSLCCCKLPEHDCSVCLTQFEPESEINRLSCGHLFHKGCLEKWLDYWNITCPLCRTPLMPEDDTSCF* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01324 153 PANTHER - 1 149 IPR044249 -
Rops9g01324 153 SMART ring_2 99 140 IPR001841 -
Rops9g01324 153 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Rops9g01324 153 SUPERFAMILY RING/U-box 94 147 - -
Rops9g01324 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 149 IPR013083 -
Rops9g01324 153 Pfam Ring finger domain 98 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01324 Rops-Chr9 21838126 21839806 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01324 1 148 C3H Transcription Factor Family AT2G04240 65.584 4.80e-60 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01324 K16285 - gmx:100786803 293.123