Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01323 ATGGGTTATTTATGTGATTTTTGTGGAGAGCAGAGGTCCTTGGTGTACTGCCGCTCTGATGCTGCCTGCTTATGTTTGTCATGTGATCGAAATGTTCATTCTGCCAATAGCCTTTCGAGGCGTCATTCAAGAACCCTTGTATGTGAGAGTTGTAATTCACAACCTGCATATGTGAGGTGTGTTGAAGAGAAAGTTTCACTTTGTCAGAACTGTGATTGGTTGGGTCATGGCACCTCTCCATCTTCTTCAACACACAAGAGGCAATCAATCAATTGCTACTCTGGCTGCCCTTCAGCAGCAGAACTTTCTTCAATATGGTCCTTTTTCATAGATATCCCTTCCATGGGTGAAGCATGTGAGCAAGAACTAGGTTTAATGAGCATTAATGAGAACAGTGACAAGAGCGCCGGTGTTCCTCCAGAAAGCCAGAATGTGTCTGGTTCAGCACAAGTGACTGATCTACCCAGCAAGGATAAATCTTGGGTTGGCACATCTTCAATACCCGAGTCAAGTTCAGAACCTCATAATCTGGACCAAGCACCTGGACCTGACAATGAACGTATGCCCAAGTTATACTGTCCCAGTAAAAAAGCTCTTGGACTATGTGAAGATGACAATCTGTATGATGATTTCAACATAGATGAAGTGGACCTTGAACTTGAGAACTATGAGGAACTTTTTGGTGTGGCTCTCACCCATTCTGAAGAACTTTTTGAAAATGGTGGAATAAATAGCTTATTTGAGACAAAGCACATGTCTGTTAGTGCTGGTGATTCCAATTGTCAGGGTGCTGTTGCTGCTGAGGGGTCATCAGTTGGGTTGGTCAATGCTTTGCAACCAACATGCAGCAACGCAGCATCTGCAGATTCAATGTTAAGCACTAAAACTGAGCCAATTATTTGTTTTACGACAAGGCAATCCCAATCAAACATTTCTTTTTCTGGCGTTACCAAAGATAGTAGTGCTGGTGATTATCAAGACTGTGGTGCTTCTTCAATGCTTCACATGGGAGAGCCTCCCTGGTGTCCTCCTTGCTCTGAGAGTTCTCTGCAAACTGCTAATCGCAGCAATGCTGTCATGCGTTATAAGGAAAAGAAAAAGGCCCGGAAGTTCGACAAGAAAGTAAGGTATGCCTCTCGCAAGGCCAGGGCTGATGTCAGAAGACGTGTGAAGGGCCGGTTTGTCAAAGCTGGTGATGTCTATGATTATGACCCTTTGGGCCCAACCAGAAGCTACTGA 1239 0.4439 MGYLCDFCGEQRSLVYCRSDAACLCLSCDRNVHSANSLSRRHSRTLVCESCNSQPAYVRCVEEKVSLCQNCDWLGHGTSPSSSTHKRQSINCYSGCPSAAELSSIWSFFIDIPSMGEACEQELGLMSINENSDKSAGVPPESQNVSGSAQVTDLPSKDKSWVGTSSIPESSSEPHNLDQAPGPDNERMPKLYCPSKKALGLCEDDNLYDDFNIDEVDLELENYEELFGVALTHSEELFENGGINSLFETKHMSVSAGDSNCQGAVAAEGSSVGLVNALQPTCSNAASADSMLSTKTEPIICFTTRQSQSNISFSGVTKDSSAGDYQDCGASSMLHMGEPPWCPPCSESSLQTANRSNAVMRYKEKKKARKFDKKVRYASRKARADVRRRVKGRFVKAGDVYDYDPLGPTRSY* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01323 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 399 - -
Rops9g01323 412 MobiDBLite consensus disorder prediction 130 187 - -
Rops9g01323 412 ProSiteProfiles CCT domain profile. 355 397 IPR010402 GO:0005515
Rops9g01323 412 CDD Bbox1_BBX-like 47 90 - -
Rops9g01323 412 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Rops9g01323 412 MobiDBLite consensus disorder prediction 130 178 - -
Rops9g01323 412 SMART bboxneu5 48 90 IPR000315 GO:0008270
Rops9g01323 412 SMART bboxneu5 4 47 IPR000315 GO:0008270
Rops9g01323 412 CDD Bbox1_BBX-like 4 47 - -
Rops9g01323 412 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Rops9g01323 412 Pfam CCT motif 355 397 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01323 Rops-Chr9 21826776 21833051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01323 1 412 C2C2-CO-like Transcription Factor Family AT3G07650 56.440 6.31e-157 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Rops9g01323 CCT 4.9e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01323 - - gmx:100783016 708.368