Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01321 ATGAAGAAAACATCAGCCCCCAGTTTGCATCAGTCTAGCCAAAGAAAAAAGAATTCTAATCTCCAAGATAGTGGTACAGGAAATGACACAAAGAGACACAATTCTCAGACAAATCCTGCACAGAAATCATTCAAATCTGTTCTCAAGAAATTTGCTGCTGTTTTTACATTGATTTTCACAGGCAAAAAAGAAACAGCCTCAAGAGTTGTTAGAAGTGATGATAGAAATAATACATCAAAAGTCAGAGGGGTGTTATCATCTTCAACTGATTTATCATCTGAAGGTAACAACAAGAATTCATCAAAATGGAAGTTTTCTTATTCCTATGCATCATCTAGCACTGCAAGTGGACAACTTGGAATTGGGAATTTCTCCTTTGAAGAAATTTACAAGTCAACTGCAAAATTCTCTCCAGATAATCAGATTGGTGAAGGTGGATTTGGAACAGTCTATAAAGGAAAGCTTAATGATGGATCTCTTGTTGCCGTGAAGCGCGCCAAGAAGGAAGTATTACACAATCACCTATTTGAGTTCAAGAATGAGATAAACACCTTGTCAAAAATTGAGCATCGGAATCTTGTGAAGTTATATGGATATGTGGAGCATGGAGATGAGAAGATTATTGTTGTTGAATACGTTGGTAATGGAACACTTAGAGAACATTTAAATGGCACGCGGGGAGATGGGCTAGAAATTGGTGAGCGACTAGACATAGCAATTGATGTAGCCCATGCAATAACTTACCTTCATATGTACACAGATAATCCAATTATCCATAGAGATATCAAAGCATCAAACATCCTAATTACTGAGAACCTAGGAGCCAAAGTGGCAGACTTCGGTTTTGCAAGGTTGTCTGATGACCCTGGTGCTACCCATATTTCAACTCAAGTTAAAGGAACAGCTGGATACATGGATCCTGAGTACCTGAGAACATATCAACTCACTGAAAAGAGTGATGTTTATTCCTTTGGCGTATTGCTAGTTGAAATGATGACAGGACGACATCCAATAGAACAAAAGAGACCCCCCAATGAGAGAGTGACAATCAGATGGGCAATGCAGATGCTGAAAAAAGGTGATGTTGTGTTTGTCATGGACCCAAGACTAAGAAGATGTCCAGCCTCCATCAAGGCAATGAAGAAGGTTATCAAGCTAGCTTCCCAATGCCTTTCACCTTCAAGACAATCAAGGCCACCTATGAAGACTTGTGCAGAGGTTCTTTGGGGAATCCGTAAAAGTTTCAAAGATGAAACCATTCCTACTCCTCCCCTTCCTTCTCACCATTCTGAAATTTTTCCTCAAAGAGAAAAGAATAAGCATATGTTATTTGGTATTGAAGATGATGACGACTATAAATTTAGCTCTGCACCTAATCATATTCATTCATAA 1392 0.3872 MKKTSAPSLHQSSQRKKNSNLQDSGTGNDTKRHNSQTNPAQKSFKSVLKKFAAVFTLIFTGKKETASRVVRSDDRNNTSKVRGVLSSSTDLSSEGNNKNSSKWKFSYSYASSSTASGQLGIGNFSFEEIYKSTAKFSPDNQIGEGGFGTVYKGKLNDGSLVAVKRAKKEVLHNHLFEFKNEINTLSKIEHRNLVKLYGYVEHGDEKIIVVEYVGNGTLREHLNGTRGDGLEIGERLDIAIDVAHAITYLHMYTDNPIIHRDIKASNILITENLGAKVADFGFARLSDDPGATHISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMMTGRHPIEQKRPPNERVTIRWAMQMLKKGDVVFVMDPRLRRCPASIKAMKKVIKLASQCLSPSRQSRPPMKTCAEVLWGIRKSFKDETIPTPPLPSHHSEIFPQREKNKHMLFGIEDDDDYKFSSAPNHIHS* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01321 463 Gene3D Transferase(Phosphotransferase) domain 1 213 421 - -
Rops9g01321 463 Gene3D Phosphorylase Kinase; domain 1 96 212 - -
Rops9g01321 463 CDD STKc_IRAK 142 408 - -
Rops9g01321 463 SMART serkin_6 136 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g01321 463 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 213 421 - -
Rops9g01321 463 ProSitePatterns Protein kinases ATP-binding region signature. 142 168 IPR017441 GO:0005524
Rops9g01321 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Rops9g01321 463 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 100 212 - -
Rops9g01321 463 Pfam Protein tyrosine and serine/threonine kinase 139 408 IPR001245 GO:0004672|GO:0006468
Rops9g01321 463 MobiDBLite consensus disorder prediction 1 42 - -
Rops9g01321 463 SUPERFAMILY Protein kinase-like (PK-like) 117 411 IPR011009 -
Rops9g01321 463 MobiDBLite consensus disorder prediction 79 99 - -
Rops9g01321 463 ProSiteProfiles Protein kinase domain profile. 136 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g01321 463 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 430 - -
Rops9g01321 463 MobiDBLite consensus disorder prediction 66 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01321 Rops-Chr9 21810561 21814410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01321 108 401 Receptor kinase-like Gene Family AT1G79620 44.554 2.95e-71 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Rops9g01321 PK_Tyr_Ser-Thr 2.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01321 - - lja:Lj2g3v2222900.1 746.888