Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01311 ATGAAGTGGGAAATGGAAATCCTCTCTCCTTCACCTTTTACTCCCAACTCCAATTGGTGTGTGGAAGATAATAGGAGCACAAAATGGACACCTGCAGAGAACAAGTTATTTGAAAATGCTCTTGCACTGCATGATAAAGATACCCCAGATCGGTGGCACAAAGTGGCTGAAATGATACCAGGGAAGACAGTTATGGATGTGATCAGACAGTACAAGGAATTAGAAGCTGATGTTATCAATATAGAAGCTGGGTTGGTCCCAGTTCCTCGATATACTACTTCTACTACCTCACCCTTCACCTTAGAATGGGTGAACACTCCAGGGTATGATGGGTTTAAAGGAAGTGGAAAGAGATCTTCCTCAGGGAGACCTCATGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAGGAACACAAATTGTTTCTACTTGGTTTGAAGAAGTATGGGAAAGGTGATTGGAGAAACATTTCCCGCAATTTTGTCATTACTAGAACCCCAACTCAGGTGGCTAGCCATGCTCAGAAGTACTTCATAAGGCAACTTTCAGGAGGCAAAGACAAGAGAAGAGCTAGCATCCATGACATAACTACAGTTAATCTCACAGAAACCACAAGAACATCTTCTTCAGAAGACACCAATAGAACCACTTCACCACAACATTCCGTGATGCTTTCACAATTGCAGCAGCAACAGCCAAATTCAACTGCTACAACACCTAGACCTCATTTTCAGTGGAATATTCAACCAAATGCAGGAGTTGTTATGGCTTTCAATCCTACACATGAAGAAATGTTCATGTCACCACATGGTGTTAACTCCTATGGGATTAAAATGCAGGGTCAAAATCTGCACAAGGGTGTTCTTCACGAGTCTTCTTATTTGGGACCTCAGACACAGAACACGGTTTTCCAAGAGCAACACTATTCCCATGCATAA 942 0.4268 MKWEMEILSPSPFTPNSNWCVEDNRSTKWTPAENKLFENALALHDKDTPDRWHKVAEMIPGKTVMDVIRQYKELEADVINIEAGLVPVPRYTTSTTSPFTLEWVNTPGYDGFKGSGKRSSSGRPHEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRTSSSEDTNRTTSPQHSVMLSQLQQQQPNSTATTPRPHFQWNIQPNAGVVMAFNPTHEEMFMSPHGVNSYGIKMQGQNLHKGVLHESSYLGPQTQNTVFQEQHYSHA* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01311 313 SMART sant 131 181 IPR001005 -
Rops9g01311 313 SMART sant 25 77 IPR001005 -
Rops9g01311 313 ProSiteProfiles Myb-like domain profile. 127 179 IPR001005 -
Rops9g01311 313 MobiDBLite consensus disorder prediction 201 241 - -
Rops9g01311 313 Gene3D - 21 88 - -
Rops9g01311 313 CDD SANT 134 179 IPR001005 -
Rops9g01311 313 Gene3D - 133 183 - -
Rops9g01311 313 MobiDBLite consensus disorder prediction 119 134 - -
Rops9g01311 313 FunFam Transcription factor SRM1 21 88 - -
Rops9g01311 313 SUPERFAMILY Homeodomain-like 27 83 IPR009057 -
Rops9g01311 313 CDD SANT 28 74 IPR001005 -
Rops9g01311 313 MobiDBLite consensus disorder prediction 112 134 - -
Rops9g01311 313 FunFam transcription factor MYB1R1 133 184 - -
Rops9g01311 313 SUPERFAMILY Homeodomain-like 128 182 IPR009057 -
Rops9g01311 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 130 182 IPR006447 GO:0003677
Rops9g01311 313 Pfam Myb-like DNA-binding domain 28 72 IPR001005 -
Rops9g01311 313 Pfam Myb-like DNA-binding domain 134 179 IPR001005 -
Rops9g01311 313 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 251 IPR043363 -
Rops9g01311 313 ProSiteProfiles SANT domain profile. 135 183 IPR017884 -
Rops9g01311 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 183 IPR017930 -
Rops9g01311 313 ProSiteProfiles SANT domain profile. 24 74 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01311 Rops-Chr9 21711454 21713796 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops9g01311 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01311 - - gmx:100784163 467.233