Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01289 ATGGCTACAAACATTGGAAAGCCACCATGGCACCATATGAGAAAAAGAGAAGGCTTAGTTTTCTTTTGTTCCTCTCAAATGCACATTAACAATCACTCACAAGCCACTACATCAAGACCAGTGCCAATGCCACCTACCATGAATGAAAATGAAGACTTGGAGAACAACACTGAGGTTTGCAACAGTACTAATGAAGAGACACCACAGATTATGTCACGTTCGGGTTCCATAGTGAAAAAGGATTCAGATCCAGTTCTGGTCACAAATAATGTTCGGTTTCAAATGCTTAGAAAATTCATGACCAATTTGAAACAGGTCATCTTTGGCACCAAGCTTGTTGTGCTTTTTCCGGCAGTTCCTTTAGCGGTTGTTGCAAATTTTTATGACTTTGGAAGGCCTTGGATTTTTGCTTTCAGCCTACTTGGACTTGCTCCGCTAGCTGAACGTGTCAGCTTCCTGACTGAGCAAATTGCATATTACACTGGCCCAACAGTTGGAGGGCTTCTGAATGCAACTTGTGGTAATGCAACCGAGATGATCATAGCATTATTAGCGCTTCACAAGAACAAAATAAATGTTGTGAAGTTCTCCTTGCTGGGTTCCATTCTCTCAAACCTTCTTTTGGTTCTTGGTAGCTCACTCCTCTTTGGTGGCTTAGCTAACCTTAAGAGGGAGCAAAGATATGACAGAAAACAAGCGGATGTAAATTCACTGGTTTTGTTGCTGGGGTTGCTATGCCATTTGCTGCCATTAATGTTCAGATATGCCTTGGCAGGAGGCAATTATTCTATAGCCACTAGTACTCTTCAATTGTCAAGAGCAAGCAGCATTGTTATGCTTCTTGCATATGTTGCATATATATTCTTCCAACTAAAAACTCATCGAAAATTGTTTGAAGCACAAGAGGAAGAAGATGATGAAGAGAAAGCCGAGCTAGGATTTTGGAATGCATTTACTTGGTTGGTGGGTATGACACTGGTCATATCTCTGCTTTCTGAATATGTTGTTGGAACCATTGAGGCTGCTTCAGATTCTTGGGGCATTTCTGTTAGCTTTATTAGCATAATTTTGCTACCAATTGTTGGAAACGCCGCAGAACATGCCGGTTCAATCATATTTGCTTTTAAAAATAAGTTGGATATATCTTTGGGTGTTGCGATGGGATCTGCTACTCAAATTTCTATGTTTGTGGTTCCATTAAGTGTGGTTGTTGCATGGATAATGGGCATTCCAATGGATCTGGACTTCAATCTTCTTGAGACTGGATGTCTTGCTTTTACAATTATTGTTACAGCGTTCACTTTACAGGATGGAACTTCACACTATATGAAAGGAGTGGTTCTTTCTCTCTGTTACATTGTCATTGCTGCATGTTTTTTTGTTCTAAAATCTCCACAAAACAACCAATATCCTAAGGTAAATTTCGGAGCTAAACCATCCTTTGATGCCAACGCCATTTGA 1461 0.4025 MATNIGKPPWHHMRKREGLVFFCSSQMHINNHSQATTSRPVPMPPTMNENEDLENNTEVCNSTNEETPQIMSRSGSIVKKDSDPVLVTNNVRFQMLRKFMTNLKQVIFGTKLVVLFPAVPLAVVANFYDFGRPWIFAFSLLGLAPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIIALLALHKNKINVVKFSLLGSILSNLLLVLGSSLLFGGLANLKREQRYDRKQADVNSLVLLLGLLCHLLPLMFRYALAGGNYSIATSTLQLSRASSIVMLLAYVAYIFFQLKTHRKLFEAQEEEDDEEKAELGFWNAFTWLVGMTLVISLLSEYVVGTIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVAMGSATQISMFVVPLSVVVAWIMGIPMDLDFNLLETGCLAFTIIVTAFTLQDGTSHYMKGVVLSLCYIVIAACFFVLKSPQNNQYPKVNFGAKPSFDANAI* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01289 486 FunFam Vacuolar cation/proton exchanger 163 306 - -
Rops9g01289 486 Pfam Sodium/calcium exchanger protein 134 291 IPR004837 GO:0016020|GO:0055085
Rops9g01289 486 Pfam Sodium/calcium exchanger protein 318 458 IPR004837 GO:0016020|GO:0055085
Rops9g01289 486 NCBIfam calcium/proton exchanger 117 460 IPR004798 GO:0006816|GO:0015369
Rops9g01289 486 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 59 465 IPR004713 GO:0006812|GO:0008324|GO:0016020
Rops9g01289 486 FunFam Vacuolar cation/proton exchanger 307 461 - -
Rops9g01289 486 Gene3D - 309 461 IPR044880 -
Rops9g01289 486 Gene3D - 163 303 IPR044880 -
Rops9g01289 486 NCBIfam calcium/proton exchanger 98 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01289 Rops-Chr9 21422735 21427475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01289 74 468 Antiporters AT2G38170 66.501 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01289 K07300 - gmx:100802344 691.034