Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01282 ATGGAGGATGTGTATGGAAATAAAGAAGGGTTGCATCATAAAATTTCTGCTTTGCTTGAATTTTCAGCTGCAGATGATCTGATTGGTTTCAAAGATGCAATTGAAAAGGAGGGTCATGATATTGATGAGGTGGGTTTGTGGTATGGAAGGAAGTTTGGCTCAAATAAAGTAGGTTATGAAGAGAGAACACCTCTCATGGTTGCTGCTATGTTTGGAAGCATGGATGTATCAACTTATATTCTAGGAACGGGTCGTGTTGATGTTAACCGGGCTAGTAGGTCAGATGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCTCCTGAAGTTGTCAAGCTTTTGCTTTATGCATCTGCTGATGTTAGTGCTGTTGATGCCAACGGTAACCGACCCCTTGACTTGATTGTCTCTGCTGCTATATCTATCTTCAATCCAAGGAAGAGGATGCTACAAGCCCTACTGGAGGGTACAGATGGTGTTGATCAAATTGATGAACAGCAACGACAAGATATGAACACACCTCGTGTTTCAAAAGATGGGACTGAGAAGAAAGATTATCCTATTGATCTCTCCCTTCCAGACATAAAGAATGGGATATATGGTACTGATGAGTTTAGGATGTATACATTCAAAGTGAAACCTTGTTCAAGGGCTTATTCTCATGATTGGACCGAGTGCCCCTTTGTTCATCCAGGGGAAAATGCAAGGCGACGTGATCCAAGGAAATATCATTATAGCTGTGTCCCTTGTCCGGAGTTTCGGAAGGGATCCTGCAGCAAGGGTGATACCTGTGAGTATGCACATGGTATCTTTGAGTGTTGGCTTCATCCTGCCCAGTATCGGACACGGCTTTGCAAGGATGAGAGTGGTTGTACAAGAAGAGTTTGCTTCTTTGCTCACAAGCCTGAAGAGCTTCGCCCCTTGTATGCTTCTACCGGTTCTGCTATTCCTTCTCCAAGGTCATATTCTGCTAGTGCTTCTGCATTGGAGATGGGTTCAATTAGCCCAATTGCACTTGGTTCTCCATCTGTCTTGATACCACCTTCCTCAACACCTCCTTTGACTCCATCTGGAGCATCTTCTCCTGTTGGAGCCATGTGGCAGACTCAATCTAATGTTTCGGTACCTACCCTGCAGCTGCCCAAAAGCAGATTGAAGACTGCATTAACTGCTAGAGATGTTGATTTAGATTTTGAATTGCGTAGGCACCAGTTAATGATGGATGAGATATCTGGCCTTTCCTCTCCTTCCAACTGGAAAAATTCCATGCCTAACAGTCCATCTTTTCCTGTTTCTTTGGGTGATCATACTGGGGAACTAAATAGGCTTTCAGGGATGAAGCCTTCTAACCTTGAAGACTTTTTTGGGTCACTTGATCCATCAATTTTGCCTAAATTCCATGGAATCTCACGTGATGTTGCAGGATCACCTCAGTTACAATCTCCAACTGGAATCCAGATGCGTCAGAATGTGAACCAGCAGCTGCGAAACTATTCTTCCAGCCTTTCCACTTCGAGTGTGATTGGATCACCTACCTTTAGAGTTGATCCATCTGTGGAAGCATCTAAAGTGGCTGCTTTGAATCCAAGACTTGCTGCCTTTTCAAAGCGCAGCCAGAGCTTTATTGAGCGCGGTGTGGTGAAACCTTCTTCTACCTTTTCTGACTGGGGCTCACCTGATGGAAAATTAGATTGGACCATACATGGAGAAGAGCTGAATAAGCTGAGGAAATCTTCTTCTTTTGGATTTCGAAGCAGCAGTACTCCTTTAACCAATATGCCTGCAAATGTTGATGAACCAGACGTGTCTTGGGTTAATTCACTAGTGAAGGATGCTACACCCATGGAATCTGGTCAGTTTAGTTTTGAAGATCAGCAAAAGCAACTGCAATTCCACCTTAACAATGGTACAGATGTGATTCCAGCATGGTTGGAGCAATTGTACTTGGAGCAGGAGCAAATGGTGGCATGA 1983 0.4418 MEDVYGNKEGLHHKISALLEFSAADDLIGFKDAIEKEGHDIDEVGLWYGRKFGSNKVGYEERTPLMVAAMFGSMDVSTYILGTGRVDVNRASRSDGATALHCAVAGGSAASPEVVKLLLYASADVSAVDANGNRPLDLIVSAAISIFNPRKRMLQALLEGTDGVDQIDEQQRQDMNTPRVSKDGTEKKDYPIDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDTCEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKPEELRPLYASTGSAIPSPRSYSASASALEMGSISPIALGSPSVLIPPSSTPPLTPSGASSPVGAMWQTQSNVSVPTLQLPKSRLKTALTARDVDLDFELRRHQLMMDEISGLSSPSNWKNSMPNSPSFPVSLGDHTGELNRLSGMKPSNLEDFFGSLDPSILPKFHGISRDVAGSPQLQSPTGIQMRQNVNQQLRNYSSSLSTSSVIGSPTFRVDPSVEASKVAALNPRLAAFSKRSQSFIERGVVKPSSTFSDWGSPDGKLDWTIHGEELNKLRKSSSFGFRSSSTPLTNMPANVDEPDVSWVNSLVKDATPMESGQFSFEDQQKQLQFHLNNGTDVIPAWLEQLYLEQEQMVA* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01282 660 SMART c3hfinal6 283 306 IPR000571 GO:0046872
Rops9g01282 660 SMART c3hfinal6 248 274 IPR000571 GO:0046872
Rops9g01282 660 Pfam Ankyrin repeats (3 copies) 55 128 IPR002110 GO:0005515
Rops9g01282 660 PANTHER UNKEMPT FAMILY MEMBER 20 615 IPR045234 -
Rops9g01282 660 Gene3D - 100 159 IPR036770 -
Rops9g01282 660 Gene3D - 11 99 IPR036770 -
Rops9g01282 660 ProSiteProfiles Ankyrin repeat region circular profile. 95 129 - -
Rops9g01282 660 ProSiteProfiles Ankyrin repeat profile. 95 130 IPR002110 GO:0005515
Rops9g01282 660 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 253 273 IPR000571 GO:0046872
Rops9g01282 660 MobiDBLite consensus disorder prediction 165 187 - -
Rops9g01282 660 SMART ANK_2a 60 90 IPR002110 GO:0005515
Rops9g01282 660 SMART ANK_2a 95 127 IPR002110 GO:0005515
Rops9g01282 660 Gene3D - 249 311 - -
Rops9g01282 660 ProSiteProfiles Zinc finger C3H1-type profile. 253 275 IPR000571 GO:0046872
Rops9g01282 660 SUPERFAMILY Ankyrin repeat 39 168 IPR036770 -
Rops9g01282 660 FunFam Zinc finger CCCH domain-containing protein 66 206 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01282 Rops-Chr9 21325198 21328223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01282 13 655 C2H2 Transcription Factor Family AT5G12850 39.806 4.28e-145 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops9g01282 Ank_4 9.8e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01282 - - aprc:113846970 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01282 9 21325198 21328223 Rops9g01282 9 21325198 21328223 ECH