Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01267 ATGGCTTCTTGGGTTAGAGGCAAATGTATCGGTAAGGGCGCGTTTGGGATCGTGAATTTAGCAAAACGAGATGGTTTTGTTTTCGCGGTGAAGTCCGTGAATTGCCAAACGGGTCACCCGGTTCAGCTTGAGGCGTTGGAGAACGAGATTCGAATCCTCCGAAACATTTCTTCGCCTCACGTGGTGGCGTTTCTAGGGGACGATGTCACGTGCGAGGGGGGTTCAACGTCGTCGTTTCGCAACCTTCACTTGGAGTACATGCCAGGTGGCACCGTCGCTGACGTGGATCATGCTTACGTGGACGAACGGTTGGTTAGGGGTTACGCGTGGTGCTTGGTGAACGCGCTTCGGCACGTTCACGCGCGGGGAATCGTTCACTGCGACGTTAAGGGGAGGAACGTGCTCGTCGGCGGAGACGGTGGCTTAGTGGCCAAACTCGCCGATTTCGGCGCGGCGGTGGAATTCTCCAGTGGGGATTGTACAGTGCAGCGTGGAAGTCCGTTGTGGATGGCGCCGGAGGTGATTCGCCGGGAATATCAGGGGGCGGAATCCGACGTGTGGTCTCTCGGATGCACTGTTATCGAGATGATCACCGGAAAACCGCCGTGGGAGGATCGTGGAGTTGATACACTTAATCGAATCGGATATTCCGACGAGTTGCCGGAGTTTCCAAGCGTGTTATCAGATCTTGGTCGTGATTTCATCGAGAAGTGCCTGAGGAGAGATCGGAACCGGCGATGGAGCTGTGATCAGCTGCTTCAGCATCCATTTTTACTTCCCAATAAGGTTCTAGAATCTTCCCCTCGTTGCGTTCTCGACTGGGTTGACTCGCGATACACAGAGTCAGAAAACGAGTTTGAAGAAGAAGAAGAGGAAGTGGTAACAAAAAGTGAAGAAAATTCAGTGAAAAATAGGATTGGTAAATTGGTAACAGAGTCGAGGTCAAATTGGGAAACAGAGGGTTGGGTTTTGGTGAGGGCAATTGAATCTAACACAGAAAAAGGAGCGGGAGCGTGTGATGATGGTGAAGGAGGAGAGGCAATTTGGGAATTTCGGAATATGGTGAGGGTAGAAGAGGGAATGGAGGGAGAGACTCGTTTGGAATATTCGGAATCAGGAGGGGTAAAACGGGAAATGTGGAAGAGGTTGGTGGTGTGGCGGCGTGAGTGTGATGATCAGTGCAACCGGAACCGTAACCGCAACCGCAAGGACAGCATCATAGCTGGAGGTGGTTATGGTTGGAACTGTCGAGTAATTTGTTCTTCTGATTTCAAAGGAGGTTTGAGTTTTGGTATAAGAGTGGAAGCAAAGCAATTTTAG 1320 0.5114 MASWVRGKCIGKGAFGIVNLAKRDGFVFAVKSVNCQTGHPVQLEALENEIRILRNISSPHVVAFLGDDVTCEGGSTSSFRNLHLEYMPGGTVADVDHAYVDERLVRGYAWCLVNALRHVHARGIVHCDVKGRNVLVGGDGGLVAKLADFGAAVEFSSGDCTVQRGSPLWMAPEVIRREYQGAESDVWSLGCTVIEMITGKPPWEDRGVDTLNRIGYSDELPEFPSVLSDLGRDFIEKCLRRDRNRRWSCDQLLQHPFLLPNKVLESSPRCVLDWVDSRYTESENEFEEEEEEVVTKSEENSVKNRIGKLVTESRSNWETEGWVLVRAIESNTEKGAGACDDGEGGEAIWEFRNMVRVEEGMEGETRLEYSESGGVKREMWKRLVVWRRECDDQCNRNRNRNRKDSIIAGGGYGWNCRVICSSDFKGGLSFGIRVEAKQF* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01267 439 SUPERFAMILY Protein kinase-like (PK-like) 4 277 IPR011009 -
Rops9g01267 439 ProSitePatterns Protein kinases ATP-binding region signature. 10 31 IPR017441 GO:0005524
Rops9g01267 439 FunFam Serine threonine protein kinase putative 2 310 - -
Rops9g01267 439 Gene3D Transferase(Phosphotransferase) domain 1 2 331 - -
Rops9g01267 439 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g01267 439 Coils Coil 272 299 - -
Rops9g01267 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Rops9g01267 439 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g01267 439 Pfam Protein kinase domain 6 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g01267 439 CDD STKc_MAPKKK 3 258 - -
Rops9g01267 439 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01267 Rops-Chr9 21034792 21039662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01267 4 377 MAP Kinase Kinase Kinase AT2G30040 55.236 9.59e-125 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Rops9g01267 Pkinase 1.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01267 - - tpra:123921217 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01267 9 21034792 21039662 Rops9g01267 9 21034792 21039662 ECH
Rops11g02398 11 40687413 40698686 Rops9g01267 9 21034792 21039662 PCT