Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01261 ATGCTAAGCCAATCCGAGTCACCCAACGCGCCCACCAACCCACTGAGTCAACTCGCTCAGATCATGTTTTCCGACAACAACAGCAACATCATGCTCGCAGCCATTGTTTCCTTGCTCCTAGTAATCCTCTTTGTCCTTATTCTCCACGTGTATGCTAAATGGTTCTTAGCTCAGGCACAATCACAATCACCACCTCGCCGCCGCCGAACTCCGGTGACCGTCTCCGGCGTTCTGGGACCTTCCCATTTCCACCTCATCAACTTAGAAGCCTCACCAATTTCAACCAAAGGACTTGACTCTTCCATAGTTTCGGCGATTCCCATGTTTGTGCATGAAGCTGAAGAAGCAGAGGAACTGGAATGTGTGATTTGTTTGAGTGCTATTGAAAAGGGTGAGATTGGACGGAGTTTACCACAGTGTGGCCATGCTTTTCATGTTGAGTGCATTGATATGTGGTTGAGTTCACATTGCAATTGTCCAATTTGTAGAGCTCCTATTGTTTCCAATGATTCTCAAATGGGTTCAGTTGATGGTGATGGTGATGACCCTGTGGTTGAGATTGTGATTGGTACTCCAAGTTATGAGATTAGTGAGAGTGAACGTGGAGATGATAGTTATGGAGGTGGTGGGGTGGGTGGTTCTATGTCAGAAACTTCATCGTCTTTGTTGGGTTGTTGCTTTTTGAAGAGAATGCTTAGTAAAGTTTCTGTCTTTTCATCTCTTCTGCATGAGAATGGGGCGGTCAAACAAACTGCTACAAGTGAGGCCATATACAGTGACGTTTGCATTGCAGTATTTAAGGCATACCTTGGTCCTAGCTTAGCTTAG 828 0.4565 MLSQSESPNAPTNPLSQLAQIMFSDNNSNIMLAAIVSLLLVILFVLILHVYAKWFLAQAQSQSPPRRRRTPVTVSGVLGPSHFHLINLEASPISTKGLDSSIVSAIPMFVHEAEEAEELECVICLSAIEKGEIGRSLPQCGHAFHVECIDMWLSSHCNCPICRAPIVSNDSQMGSVDGDGDDPVVEIVIGTPSYEISESERGDDSYGGGGVGGSMSETSSSLLGCCFLKRMLSKVSVFSSLLHENGAVKQTATSEAIYSDVCIAVFKAYLGPSLA* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01261 275 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Rops9g01261 275 Pfam Ring finger domain 120 163 IPR001841 -
Rops9g01261 275 SMART ring_2 121 162 IPR001841 -
Rops9g01261 275 SUPERFAMILY RING/U-box 106 169 - -
Rops9g01261 275 CDD RING-H2_EL5-like 121 163 - -
Rops9g01261 275 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 172 - -
Rops9g01261 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 168 IPR013083 -
Rops9g01261 275 FunFam RING-H2 finger protein ATL1 85 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01261 Rops-Chr9 20941486 20943720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01261 29 164 Rapid Response to Elicitors AT3G16720 39.568 1.52e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01261 - - aprc:113874423 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01261 9 20941486 20943720 Rops9g01261 9 20941486 20943720 ECH
Rops11g02393 11 40610267 40611061 Rops9g01261 9 20941486 20943720 PCT