Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01240 ATGGGATTCACTTCATCCCTTAGAAGTCCAAAGAAAGAAGAACAGGAAGTACCAGAAGCCATCAACCCCATATTACCCAGTTCTAAAGAAGCTTACACTGATGAAGATTTCAATATTTTGGATGAACTTGAAGGGGTCTTAAACATTGAGGAAGAACAAAAGTCACCACCACAAAAAACTTGCAGTGGTCAGCTTCATTGGGATTTCATGGAATGGGAGAATTTTCCTTCTGTTGGAGAGGAAGCAGAAGAAGATTATGAAGGGAAAGATAAGGTAACAGAGAACAGAAGCAAATGCATTTTAGGGGAGCAACAGATAAAGAGAGAAGATAATGTTGGGTTTTGGGAAGTGGATGATGAAAAGATGATGGCTTTAAATTTGAATTTGAACTATCAAGAGGTTTTGGATGCATGGTCTGATCGTGGGTCTCTATGGACTGAAGATTGTTCTTTTTCATTGGCCACCAATAATGGTTACTATATGGGAGAAGTGCCAATATTGGAAGAAGAGAGAACAAGAAGGGAAGCGAGTGTTCTTAGGTACAAAGAGAAACGCCAGAACAGATTGTTCTCAAAGAAGATAAGATACCAAGTTCGGAAACTAAACGCTGATAGAAGACCAAGAATCAAGGGTCGCTTTGTGAAGAGACATTGA 654 0.3945 MGFTSSLRSPKKEEQEVPEAINPILPSSKEAYTDEDFNILDELEGVLNIEEEQKSPPQKTCSGQLHWDFMEWENFPSVGEEAEEDYEGKDKVTENRSKCILGEQQIKREDNVGFWEVDDEKMMALNLNLNYQEVLDAWSDRGSLWTEDCSFSLATNNGYYMGEVPILEEERTRREASVLRYKEKRQNRLFSKKIRYQVRKLNADRRPRIKGRFVKRH* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01240 217 ProSiteProfiles CCT domain profile. 174 216 IPR010402 GO:0005515
Rops9g01240 217 MobiDBLite consensus disorder prediction 1 29 - -
Rops9g01240 217 Pfam CCT motif 174 216 IPR010402 GO:0005515
Rops9g01240 217 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 13 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01240 Rops-Chr9 20479562 20480921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01240 85 216 C2C2-CO-like Transcription Factor Family AT1G25440 40.260 6.28e-21 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops9g01240 CCT 6.9e-19 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01240 9 20479562 20480921 Rops9g01240 9 20479562 20480921 ECH