Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01233 ATGGCCACTGAAGCGAGGGCAAAATTCCAAAACCCGGATTTCCGACCCGATTTCCATCCGGACTTAACGGTGTCAACTCACGACGGCCTCCACTTCTGGCAGTTCATGATTTCTGGATCCGTCGCAGGTTGTGTGGAACACATGGCCATGTTCCCCGTCGACACCGTTAAGACCCATATGCAAGCCATCGGTTCATGCCCCATCAAATCCGTTACGGTCCGTCAAGCCCTCCGTTCCATTCTCCAATCGGAGGGTCCCTCCGCCCTCTACCGCGGCATCGGAGCCATGGGCCTCGGTGCCGGACCTGCTCACGCCGTTTATTTCTCCGTTTACGAGACTTGTAAGAAGCGTTTCTCTGATGGGAACCCCAATAACGCCGCTGCCCACGCCGCTTCTGGCGTTTGCGCCACCGTGGCAAGCGACGCCGTTTTCACTCCGATGGATATGGTGAAGCAGAGGTTGCAACTGAGTAATAGTGGGTATAAGGGTGTGTGGGATTGTGTGAAGAGGGTGATGAGTGAGGAAGGGATTGGAGCGTTTTATGCTTCTTATAGGACCACCATTTTGATGAATGCGCCGTTTACGGCGGTGCATTTTGCCACGTACGAGGCGGTGAAACGAGGACTCAAGGAGGTTTCACCGGAGAGTGTTGATGATGAACGGTTGATTGTTCATGCCACGGCTGGGGCTGCTGCTGGTGCTTTGGCTGCTGCAGTTACAACACCACTTGATGTGGTTAAAACTCAATTGCAATGTCAGGGCGTCTGTGGATGTGATAGGTTCAAAAGTGGTTCTATTGGGGATGTTATTAAAACAATAGTGGAAAAGGATGGATACAGAGGACTCCTGAGAGGATGGATTCCCAGGATGCTGTTTCATGCTCCTGCAGCTGCTATTTGCTGGTCTACATATGAAGCTGGAAAGTCCTTTTTCCAAGATTTCAATCAACAGAAAGATAGTAGCACTGTCACCTAA 975 0.5138 MATEARAKFQNPDFRPDFHPDLTVSTHDGLHFWQFMISGSVAGCVEHMAMFPVDTVKTHMQAIGSCPIKSVTVRQALRSILQSEGPSALYRGIGAMGLGAGPAHAVYFSVYETCKKRFSDGNPNNAAAHAASGVCATVASDAVFTPMDMVKQRLQLSNSGYKGVWDCVKRVMSEEGIGAFYASYRTTILMNAPFTAVHFATYEAVKRGLKEVSPESVDDERLIVHATAGAAAGALAAAVTTPLDVVKTQLQCQGVCGCDRFKSGSIGDVIKTIVEKDGYRGLLRGWIPRMLFHAPAAAICWSTYEAGKSFFQDFNQQKDSSTVT* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01233 324 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Rops9g01233 324 PRINTS Mitochondrial carrier protein signature 139 157 IPR002067 GO:0055085
Rops9g01233 324 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Rops9g01233 324 PRINTS Mitochondrial carrier protein signature 181 199 IPR002067 GO:0055085
Rops9g01233 324 PRINTS Mitochondrial carrier protein signature 48 62 IPR002067 GO:0055085
Rops9g01233 324 Gene3D Mitochondrial carrier domain 213 324 IPR023395 -
Rops9g01233 324 Gene3D Mitochondrial carrier domain 6 212 IPR023395 -
Rops9g01233 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 208 IPR018108 -
Rops9g01233 324 PANTHER MITOFERRIN-1-RELATED 27 314 - -
Rops9g01233 324 FunFam Mitochondrial RNA-splicing protein MRS3 11 158 - -
Rops9g01233 324 Pfam Mitochondrial carrier protein 221 313 IPR018108 -
Rops9g01233 324 Pfam Mitochondrial carrier protein 30 120 IPR018108 -
Rops9g01233 324 Pfam Mitochondrial carrier protein 125 210 IPR018108 -
Rops9g01233 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 117 IPR018108 -
Rops9g01233 324 SUPERFAMILY Mitochondrial carrier 28 305 IPR023395 -
Rops9g01233 324 FunFam Mitochondrial RNA-splicing protein MRS3 159 322 - -
Rops9g01233 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 310 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01233 Rops-Chr9 20425430 20429338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01233 1 321 Chloroplast and Mitochondria Gene Families AT1G07030 73.860 2.53e-173 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01233 K15113 - gmx:100802640 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01233 9 20425430 20429338 Rops9g01233 9 20425430 20429338 ECH