Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01230 ATGATTTCAACTATCCCAATTCTCAATTTGTTGAAGCAGCCTCTGTTATGGAGATTTATGGGTTTCATATCAAGTATTATTGGACTGCTCTGTTATGCACTGAGCACCTCTTTCAAACTTCTATTTGGAGAGTGGAATTTGGTGAAGTTCTTTCTCTATGGAGTGGGAAGTTTTGTTATGTGCAGCTTTGTATTACTCGCAAAGAAATGGCAATTGTCAAGGAGTCTTATGTTGAAAGCTCACGTGGGGTTTTTAGTTTTGATGCTCACTTCTGTTTACTCCTTTTTCTATGACAAGTCAGTGAATGGAAAATCAGATGTATTAGGCCTGATTTCATGTGCCACATTTGCTTTAATGTCATTTAGTTTGTCAAGACAAATTGACCTCGGATTCGAGGTTGATCTGCTCAATTTTTTCCTTGGATGTGTTACGGTGCAGCTGATGAAGATTAACTTGATGTTGGCTTTTCTTGGGGGAGTCTTTTGTTATTTCCTTATTGTTCTTCGGTCTTCATTGGATTCCCAACAAGGGATTGGGATTGTTGGTGCCACTACCACCAATCATGTAGCCATAGAAATTGATTCTTCAAATAGATTGGAAATAGGAGCTGATCATGGTAGCAACACTGAATATAACAATCACCACCAAGAATTACCCTCATTACGCAGAAGGAATTTTGTGACAACTGTTCCAGACAAGGTGTATCTGAGGAATACATTGGCTTTTTACCGGACAACTACCAATGCTACAGCATTCATACAAGCTGAATTTAGAGAACACATGCTGAAGGAGATAAAGGAATTTCAATTTTCCAATCCAGAGGATGAAGCACGCACGATAGTTGCAGCCATGAAGATTCAACATGCCTTTCGCAATTATAGGACAAGGAAGATGACTGAAGCTGCTACTTGCATTCAGCGCACCTTCCGTGCATGGAAGATCCATAAAGAATCTCTCTACCTACGTCAACAAGCTATTAAAATTCAAGCTGCTTTTCGAGGTTTCCAAGTGCGGAAACAATATTCTAAAATTCGTTGGTCTATTGGAATCATTGATAAAGCAATCCTACGCTGGCGTTTTAAGAGAAGAGGCTTTCGTGGGCTCTATGTTAACCCGGTGCAGAGAATGGAAGATCAGGCCATGTTACGCTCTAAGAAAACGCAGCAAAGGTATAGGAGAATGAAAATTGATACATAA 1197 0.3968 MISTIPILNLLKQPLLWRFMGFISSIIGLLCYALSTSFKLLFGEWNLVKFFLYGVGSFVMCSFVLLAKKWQLSRSLMLKAHVGFLVLMLTSVYSFFYDKSVNGKSDVLGLISCATFALMSFSLSRQIDLGFEVDLLNFFLGCVTVQLMKINLMLAFLGGVFCYFLIVLRSSLDSQQGIGIVGATTTNHVAIEIDSSNRLEIGADHGSNTEYNNHHQELPSLRRRNFVTTVPDKVYLRNTLAFYRTTTNATAFIQAEFREHMLKEIKEFQFSNPEDEARTIVAAMKIQHAFRNYRTRKMTEAATCIQRTFRAWKIHKESLYLRQQAIKIQAAFRGFQVRKQYSKIRWSIGIIDKAILRWRFKRRGFRGLYVNPVQRMEDQAMLRSKKTQQRYRRMKIDT* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01230 398 Pfam IQ calmodulin-binding motif 299 317 IPR000048 GO:0005515
Rops9g01230 398 Pfam IQ calmodulin-binding motif 324 341 IPR000048 GO:0005515
Rops9g01230 398 Gene3D - 297 347 - -
Rops9g01230 398 ProSiteProfiles IQ motif profile. 321 345 IPR000048 GO:0005515
Rops9g01230 398 ProSiteProfiles IQ motif profile. 282 308 IPR000048 GO:0005515
Rops9g01230 398 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 214 394 - -
Rops9g01230 398 SMART iq_5 320 342 IPR000048 GO:0005515
Rops9g01230 398 SMART iq_5 297 319 IPR000048 GO:0005515
Rops9g01230 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 349 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01230 Rops-Chr9 20373248 20375512 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01230 229 396 CAMTA Transcription Factor Family AT3G16940 50.510 1.54e-45 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01230 - - cam:101500062 434.106