Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01226 ATGATTTCATTTACCCCAATCCTCAGTTTGTTGAAGCAGCCTCTGTTTTGGAGATTCATTGGTTTCATATCAAGTATAGTTGGACTGCTCTGTTATGCACTGAGCTCCTCTTTCAAGCTTCTATTTGGAGAGTGGAATTTGCTGAAGGTCTTTCTCTATGGAGTGGGGAGTTTTATAATTTGCAGCTTTGTGTTATTAGCAAAGAAATGGCAACTGTCAAGGAGTCTTATGTTGAAAGCTCACGTTGGATTTTTTGTTTTAATGCTCACCTCTGTGTACTCCTTTTTCTATGATAAGGCAGTGAACGGAAAATCAGATGTATTAGGCTTGATATCATGTGCTGCGTTTGCTTTGATGTCATTCAGTTTGTCAAGACAAAATGACCTCGGATTCGAGGTAGATGTGCTTAATTTTTTCCTTGGATGTCTTACGGTGCAGCTGATGAAGATTAACATGATGTTGGCTTTTCTTGGGGGAGTCTTTTGTTATTTCTTCATAGTTCTTCGGTCTTCGTTGAATTCCCAAAAGGGAATTGGGACTATTGGTGCCACTGCCACTGATCATGTAGCTATAGAAATTGACGCTTCAAATAGATTGGAAATAGGAGCTGATCATGGCAGAGCACCAAATATAACAATCACCGCCAAGAATCACCCTCATCAAGCAAAAGACCAGTATCTGAGGACTACTTTAGATTTTAACAGGACAACTGCTGATACTGCAGCACAAGCTGAATTTAGAGAACACAAGGGATTTCTATTTTCCAAACCAGAGGCTAAAGTTCACAAGCTAGTTGCAGCCATGAAGATTCAACATGCCTTTCACAACTATAAGACAAGGAAGACGACTGAAGCTGCTACTCGCATTCAGCGTACCTTCCGTGCATGGAAGATCCGTAAAGATTCTATCTATAAGCGTCAACAGGCTATAAAAATTCAAGCTGCTTTTCGAGGTTTCCAGGTGCGGAAACAATATTCTAAAATTCTTAGGTCTGTTGGAGTCATTGATAAAGCAGTCCTGCAATGGCATTTGAAGAGAAGAGACTTTCGTGAGCTCGATATCGATCCTGTGCAAGAAATGGAAGATAGAGACAAGAAAAGAAAGTAG 1107 0.4029 MISFTPILSLLKQPLFWRFIGFISSIVGLLCYALSSSFKLLFGEWNLLKVFLYGVGSFIICSFVLLAKKWQLSRSLMLKAHVGFFVLMLTSVYSFFYDKAVNGKSDVLGLISCAAFALMSFSLSRQNDLGFEVDVLNFFLGCLTVQLMKINMMLAFLGGVFCYFFIVLRSSLNSQKGIGTIGATATDHVAIEIDASNRLEIGADHGRAPNITITAKNHPHQAKDQYLRTTLDFNRTTADTAAQAEFREHKGFLFSKPEAKVHKLVAAMKIQHAFHNYKTRKTTEAATRIQRTFRAWKIRKDSIYKRQQAIKIQAAFRGFQVRKQYSKILRSVGVIDKAVLQWHLKRRDFRELDIDPVQEMEDRDKKRK* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01226 368 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 226 357 - -
Rops9g01226 368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 332 IPR027417 -
Rops9g01226 368 Gene3D - 281 332 - -
Rops9g01226 368 ProSiteProfiles IQ motif profile. 305 333 IPR000048 GO:0005515
Rops9g01226 368 SMART iq_5 304 326 IPR000048 GO:0005515
Rops9g01226 368 SMART iq_5 281 303 IPR000048 GO:0005515
Rops9g01226 368 Pfam IQ calmodulin-binding motif 308 325 IPR000048 GO:0005515
Rops9g01226 368 Pfam IQ calmodulin-binding motif 283 300 IPR000048 GO:0005515
Rops9g01226 368 ProSiteProfiles IQ motif profile. 282 311 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01226 Rops-Chr9 20337761 20340334 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01226 254 362 CAMTA Transcription Factor Family AT3G16940 51.754 5.59e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01226 - - cam:101500062 355.525