Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01207 ATGGCTTCTTCTTCAGGTAGCTTAGACACCTCTGTAAACTCTTACAACAACTTCACCTTTTCAACTCACCCTTTCATGACCACTTCCTTCTCTGACCTTCTTGCTTCTCCCATTGATGACAAGCCTCGTGGGTTGTCTGAACGTATAGCTGAGAGAACTGGTTCTGGTGTTCCAAAATTCAAGTCTACACCACCTCCTTCTCTTCCTCTTTCTCCTCCTCCCATTTCTCCTTCTTCTTACTTTGCTATTCCTCCTGGGTTGAGTCCAGCTGAGCTTCTTGACTCACCGGTTCTCCTTAACCCTTCTAACATTTTGCCATCTCCAACAACTGGATCTTTTGCTGCTTTCAATTGGAAGAACACTTCTGGGGGAAACCAGCAAATCAAAGAAGAAGACAAAAGCTTCTCAAATTTCTCTTTTCAAACCCAACCAGCACCTCCTGCTACATCCACTGCAACGTTTCAATCTTCAAACGTTACAGTTCAAACACAACAGCCATGGAGTTTTCAGGAAGCCACAAAACAGGATAGTTTCTCATCAGGAAAGAGTATGATGAAAACTGAAAACTCTTCTTCGATGCAGAGTTTCTCCCCTGAGATTGCTAGTGTCCAAACTAACCATAATAATGGGTTTCAATCGGATTATAACAATTATCCTCCACAACAATCTCAGACCTTAAGTAGAAGGTCAGATGATGGGTACAATTGGAGGAAATATGGTCAAAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGTTATTATAAATGCACATACCCCAATTGCCCTACAAAGAAGAAGGTTGAGAGGTCTATAGATGGACAAATCACTGAGATAGTTTACAAGGGTACTCATAACCATCCTAAGCCCCAGTCTACTAGGAGAAACTCATCATCTTCATCTTCTCTTGCAATCCCTTCTTCAAATTCCATCAGCTCAGAAATCCCAGATCAATCATATGCCACCCATGGCAGTGGACAAATGGATTCAGTTGCCACCCCAGAGAACTCATCAATATCCATAGGGGATGACGATTTTGAGCAGAGTTCCCAAAAGTGTAAATCAGGTGGAGATGAGTTTGATGAAGATGAACCTGATGCTAAAAGATGGAAAATTGAAGGTGACAATGAGGGTATATCAGCACCTGGAAGTAGAACAGTGAGAGAGCCAAGAGTTGTCGTTCAGACAACTAGTGACATTGATATCCTAGATGATGGGTACCGATGGAGGAAATATGGGCAAAAAGTAGTCAAGGGCAACCCAAATCCAAGGAGTTACTACAAGTGTACACATCCAGGATGCCCAGTGAGAAAGCATGTAGAGAGAGCCTCACATGACCTAAGGGCTGTGATCACAACCTATGAAGGAAAGCACAACCATGATGTCCCAGCAGCACGTGGCAGTGGTAGCCATTCTGTGAGTAGACCATTGCCAAACAACACTGCAAACCCCACCAATGCAGCCACTGCCATAAGGCCCTCAGCAGTGACCCACCACACTAACAATTCTTTTCAGAATCTAAGACCACAAGCACCTGAAGGGCAATCACCCTTCACACTAGAGATGCTGCAGAGCCCAGGAAGTTATGGATTCTCAGGGTTTGGGAATCCAATGGGGTCTTACATGAATCAGCAGCAACAACAACAACTATCTGACAATGTTTTTTCCTCCAGAGCCAAGGAGGAGCCTAGAGACGACATGTTCCTTGATTCTTTGCTATGCTGA 1722 0.4379 MASSSGSLDTSVNSYNNFTFSTHPFMTTSFSDLLASPIDDKPRGLSERIAERTGSGVPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPAELLDSPVLLNPSNILPSPTTGSFAAFNWKNTSGGNQQIKEEDKSFSNFSFQTQPAPPATSTATFQSSNVTVQTQQPWSFQEATKQDSFSSGKSMMKTENSSSMQSFSPEIASVQTNHNNGFQSDYNNYPPQQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSIDGQITEIVYKGTHNHPKPQSTRRNSSSSSSLAIPSSNSISSEIPDQSYATHGSGQMDSVATPENSSISIGDDDFEQSSQKCKSGGDEFDEDEPDAKRWKIEGDNEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVSRPLPNNTANPTNAATAIRPSAVTHHTNNSFQNLRPQAPEGQSPFTLEMLQSPGSYGFSGFGNPMGSYMNQQQQQQLSDNVFSSRAKEEPRDDMFLDSLLC* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01207 573 MobiDBLite consensus disorder prediction 532 573 - -
Rops9g01207 573 MobiDBLite consensus disorder prediction 165 230 - -
Rops9g01207 573 MobiDBLite consensus disorder prediction 346 374 - -
Rops9g01207 573 MobiDBLite consensus disorder prediction 280 386 - -
Rops9g01207 573 MobiDBLite consensus disorder prediction 165 235 - -
Rops9g01207 573 MobiDBLite consensus disorder prediction 285 345 - -
Rops9g01207 573 MobiDBLite consensus disorder prediction 471 485 - -
Rops9g01207 573 Gene3D WRKY domain 220 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops9g01207 573 MobiDBLite consensus disorder prediction 37 73 - -
Rops9g01207 573 ProSiteProfiles WRKY domain profile. 231 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g01207 573 Pfam WRKY DNA -binding domain 403 459 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g01207 573 Pfam WRKY DNA -binding domain 231 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g01207 573 ProSiteProfiles WRKY domain profile. 397 462 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g01207 573 MobiDBLite consensus disorder prediction 240 259 - -
Rops9g01207 573 FunFam WRKY transcription factor 33 389 455 - -
Rops9g01207 573 Gene3D WRKY domain 389 455 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops9g01207 573 SUPERFAMILY WRKY DNA-binding domain 229 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops9g01207 573 SUPERFAMILY WRKY DNA-binding domain 394 462 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops9g01207 573 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 93 492 IPR044810 GO:0003700
Rops9g01207 573 SMART WRKY_cls 230 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g01207 573 SMART WRKY_cls 402 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g01207 573 MobiDBLite consensus disorder prediction 457 485 - -
Rops9g01207 573 MobiDBLite consensus disorder prediction 532 555 - -
Rops9g01207 573 FunFam WRKY transcription factor 221 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01207 Rops-Chr9 20057452 20060546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01207 57 572 WRKY Transcription Factor Family AT2G38470 47.070 1.97e-118 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops9g01207 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01207 K13424 - gmx:100127385 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02310 11 38945277 38948067 Rops9g01207 9 20057452 20060546 PCT