Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01202 ATGCTGTCTGGGGACACTCCTCCCAACCAAACCATTTACATCAAGAATCTCAATGAGAAGGTTAAGAAAGAAGAGTTGAAGAGATCACTGTATTGCTTATTCTCTCAATATGGAAGGATTTTGGATGTTGTTGCTCTAAAGACACCCAAGCTTCGAGGACAGGCATGGGTTTGTTTTAGTGAAGTCACTGCTGCCAGTAATGCAGTGCGACAAATGCAAAACTTCCCATTTTATGACAAACCTATGCGAATTCAATATGCAAAAGCAAAGTCAGATTGTATTGCTAAAGAAGAGGGAAGTTATGTTCCAAGGGAAAAGAAAAAGAAACAAGAGGAAAAAGCTGAAAGAAAGCGACGAACTGAAGAAGCACCGCAATCTGGTGTGGCTAATGGAACACATGCTGCAAATAATGGTGGCCCAACAGCTCCATTCCGTCAAGGACCTGGTGCCCAAGAAGCAGCTGCTCCTAACAATATTTTGTTCATAGAGAATTTACCTTATGAAACCACCGCTAGGATGCTTGAAATGCTCTTCGAACAATACCCAGGTTTTAAGGAAGTACGCTTGATTGAAGCAAAGCCAGGAATAGCATTTGTAGATTTTGAAGATGAGGTGCAATCATCCATGGCCATGCAGGCTCTTCAGGGCTTCAAAATCACCCCTCAGAATCCCATGATTATAACCTTTGCTAAGAAGTAG 699 0.4206 MLSGDTPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYDKPMRIQYAKAKSDCIAKEEGSYVPREKKKKQEEKAERKRRTEEAPQSGVANGTHAANNGGPTAPFRQGPGAQEAAAPNNILFIENLPYETTARMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALQGFKITPQNPMIITFAKK* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01202 232 MobiDBLite consensus disorder prediction 100 123 - -
Rops9g01202 232 Gene3D - 3 114 IPR012677 -
Rops9g01202 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Rops9g01202 232 CDD RRM1_U1A_like 11 88 - -
Rops9g01202 232 Gene3D - 149 232 IPR012677 -
Rops9g01202 232 MobiDBLite consensus disorder prediction 125 139 - -
Rops9g01202 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 232 IPR000504 GO:0003723
Rops9g01202 232 SMART rrm1_1 159 228 IPR000504 GO:0003723
Rops9g01202 232 SMART rrm1_1 11 85 IPR000504 GO:0003723
Rops9g01202 232 FunFam U1 small nuclear ribonucleoprotein A 4 109 - -
Rops9g01202 232 FunFam U2 small nuclear ribonucleoprotein B'' 149 232 - -
Rops9g01202 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 219 IPR000504 GO:0003723
Rops9g01202 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 82 IPR000504 GO:0003723
Rops9g01202 232 CDD RRM2_U1A_like 156 228 - -
Rops9g01202 232 SUPERFAMILY RNA-binding domain, RBD 7 221 IPR035979 GO:0003676
Rops9g01202 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 9 90 - -
Rops9g01202 232 MobiDBLite consensus disorder prediction 100 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01202 Rops-Chr9 19990285 19993337 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01202 3 232 Eukaryotic Initiation Factors Gene Family AT1G71770 21.186 4.78e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01202 K11094 - gmx:100805822 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01202 9 19990285 19993337 Rops9g01202 9 19990285 19993337 ECH