Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01197 ATGGGATCCCACGATGGATATCATGCTGCCAAATTGCTTCAAGCCCAAAGCCACATATGGAATCACATTTTCAGCTTCATAAACTCCATGTCCCTAAAATGCGTAGTTGATTTAGGTATAGCAGATGTCATACGCAAATATGGTAAACCCATGCCACTTTCACAACTCATTGCTTCACTACCAATCCACCCATCCAAAACATGCTGCATCTATCGCTTGATGCGGATCATGACCCATTCTGGCTTCTTCTCTCAACAGAATGTCACTGAGAATGAGCTAGAAGTGGAGTATATGCTAACTGATGCATCTACACTCCTCCTTAAGGACCACCCCTTTAGTGTGACACCTTTCGTGCATGCCATGGTTGATCCAGTTTTGATAAACCCATGGCATCAATTCTCTACTTGGTTCAAAAATGATGATCTTACACCATTTGAAACGGCACATGGGATGTTGATGTGGGACTATGCTGAGAGTGATCCAAAATTTAGTGACCTTTTCAATGAAAGCATGGCAAGTGATGCTCGATTGGTTGCAAGTTTATTGATCGAGAAGTTCACCGGGTTGTTCACGGGATTGGAGTCATTGGTTGATGTTGGGGGAGGTACAGGGACTATGGCAGAGGTCATTGCCAAATCATTCCCACAGATGGAGTGCATTGTATTTGATCTCCCACATGTTGTTGCTGGCTTGCATGGAAGTGACAACCTAAAATATGTTGGAGGAGACATGTTTAAGGCAATTCCTCCAGCCGATGCCATTTTGTTAAAGTGGATAATGCATGACTGGAAAGAGGAACAATGTGTGAACTTACTGAAGAAATGCAAGGAGGCAATCACGAGCAAAGGCAAAAAAGGGAAGGTGATTATCATAGAGATGGTGGTGGAGAATGAGAAGGGAGACCATGAATCAATTGAAACACAGCTCTTCTTTGATATAATGATGATGGTGGATCTCAGTGGAAAAGAGAGAACCAAGAAAGAATGGATTAAGTTGATTAACTCTGCTGGTTTCAGTGAATACAAGATAACTCCTGTTTTGGGCTTAAGGTCTGTCATTGAGATCTATCCATAG 1074 0.4246 MGSHDGYHAAKLLQAQSHIWNHIFSFINSMSLKCVVDLGIADVIRKYGKPMPLSQLIASLPIHPSKTCCIYRLMRIMTHSGFFSQQNVTENELEVEYMLTDASTLLLKDHPFSVTPFVHAMVDPVLINPWHQFSTWFKNDDLTPFETAHGMLMWDYAESDPKFSDLFNESMASDARLVASLLIEKFTGLFTGLESLVDVGGGTGTMAEVIAKSFPQMECIVFDLPHVVAGLHGSDNLKYVGGDMFKAIPPADAILLKWIMHDWKEEQCVNLLKKCKEAITSKGKKGKVIIIEMVVENEKGDHESIETQLFFDIMMMVDLSGKERTKKEWIKLINSAGFSEYKITPVLGLRSVIEIYP* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01197 357 Pfam Dimerisation domain 30 77 IPR012967 GO:0046983
Rops9g01197 357 Pfam O-methyltransferase domain 130 339 IPR001077 GO:0008171
Rops9g01197 357 CDD AdoMet_MTases 196 292 - -
Rops9g01197 357 FunFam O-methyltransferase ZRP4 108 357 - -
Rops9g01197 357 Gene3D Vaccinia Virus protein VP39 107 357 IPR029063 -
Rops9g01197 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 355 IPR029063 -
Rops9g01197 357 PANTHER O-METHYLTRANSFERASE 12 342 IPR016461 GO:0008168
Rops9g01197 357 FunFam Coniferyl alcohol 9-O-methyltransferase 3 106 - -
Rops9g01197 357 SUPERFAMILY "Winged helix" DNA-binding domain 11 111 IPR036390 -
Rops9g01197 357 PIRSF O-mtase 3 357 IPR016461 GO:0008168
Rops9g01197 357 Gene3D - 2 106 IPR036388 -
Rops9g01197 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 357 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01197 Rops-Chr9 19893616 19895294 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01197 30 343 Monolignol Biosynthesis Gene Families AT5G54160 31.975 3.42e-54 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01197 - K16040 gmx:100808134 580.867