Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01188 ATGCCTACATTAAGAGGATTCGAGGGGAGTATTGCAAGACCATCTGTGGCAGCAAACAACTTTGAGATCAAACCAGCTTTAATTTCAATGATCCAAAATTCTGTTCAGTTTGGTGGGTTGCCTTCGGAAGACCCAAATCAACATCTGGTTATGTTCTTACAGTTGTGTGACACCGTTAAATACAATGGAGTCACTGAAGATGCAATCAGACTTCGACTTTTCCCTTTCTCTCTTAGGGATAGAGCAAGTCAATGGCTATCATCACTAGCTAGAGGTTCCATAACTACATGGGACCAGCTTACACAACATTTCTTGGCTAAGTATTTTCCTCCTTCTAAATCTGCTAAGTTAAGAAATGATATTTCTACTTTTGTGCAGTGGGAATCTGATTCCATTTATGAAGCTTGGGAACGTTTTCAAGACAAAGTCAGAAAATGTCCACACCATGATCTGGCCTTGTGGCAGTTGCTAGATACATTTTATAATGGCTTATCATCTGCTAACCGTTCACTTGTTGAGTCTGCTGCAGGAGGATCTATTTGGAAGAAAACTCCGACTCAAATCCAAGCACTGATTGAAGAAATGGCGCTTAACAGCTATCAGTGGCAAAATGAGCACCAGACAAGGAAGCCATCAGGTATGCATTCTGGTGACACCTCTACTAGTATTCTAAGTCAATTAGAATCTTTGTCAAAGAAAGTTGAAACTTTGATGGTAACAAAAAGTCCAGATCCACCAATCATTTGTGAAGCATGTGGTGGACATGGACATTTAAGCACAACTTGTCAAGTGGGAAGTCCATTTGCTCTTGAGTCCGAAGAAGCTAATTATGTTGGTAATTACAATCAGCCTCAGTACAACCCATATTCCAACACTTATAATCTTGGTTGGAAGGATCACCCCAATTTTAGATGGACAAATCAACAAGGTACTATGGCACCTAAGCGTCAGCGCACTAGTAGTAGTGCCATTCCTTCTCACTCTGTAGCAGAGACGATGGAGCAGTTTGGTGTGTTAGAGACCATCACAGAGCACCTAGTTCGAGCGGGCTGGGAGCTATTTGCATCGATTCAGTGTGATGCTTATCTGGAGCCGACACTTGAGTTCCTATCCACCCTCACTGTCTCATGTGAGAATCAGACCATTGACCATCCTGATACCATCCAGTTCTGCCTCAACAGGCGCCAGTTTTCTATGTCGTTGAATGAGTTCAACGTTGCCATGGGGTTTGAGACTGCTGATTCCATCCTTTTACCAGCTTACCAGAATGCTTTTCTGGATTTTCCTTCCTCATTTGTAGATGTTAATTTCTGGGGTGAGATTGGAGTAGCCACACACCATTACAACCCTAGCTCCACAAAATCTTCATTCATCCGTGACCCTATTTTGAGATGGTTACACAGATTTATAGCTCATAGCATTGTAGGACGGCAGCGGAGCACAGGGGTTGTAACTAAGACTAACTTATTTTTTTTATGGTGTTTAGTGCAGGGTCACCATTGTAACCTTGGTTACTGGTTTCTTCAGTCTGTTCAGAAGCTTGGTAAGCCCAAAGGGAATGCCAAGAAGAGATACATTCCAGTTGGGTCCTACATCTCTAACCTGGCTAGGAATCTTGGAGCTCTTCATCCACAGGCCCATCTGGTCAAGCAGATGGAGCCCATAGATGAAGACATGCTGAACAGGCATGGCAAGGATGCTCAACTGATCACTAATGTGATGATGGAGAAGCGCAAGGGGGTGTTTACAGGATTAGAGTCGATAGTTGACATTGGTGGAATCACAGGGACTACGGCAAAGGCAATTGCCAAATCATTCCCACAAATGGAGTGCATTGTATTTGATCTCCTACATGTTGTTGCTGGGTTGCAAGGAAGTGACAACCTAAAATATGTTGCAGGGGACATGTTTAAGGCAATTCCTTCTGCCGATGCTATTTTGATGAAGCAATGGATAATGCATGACAGGAATGATGAGGAATGTATCAACATACTGAAGAAATGCAAGGAAGCAATCACGAACAAAGGAAAAGAAGGGAAGGTGATTATCATAGACATTGTGATGGACAATGAGATGGGAGACCATGAATCGATTGAAACACAGCTCTTCTGTGATGTGATGTTAATGGTGTTGTACATTGGCAAAGAGAGAACCAAGAAAGAATGGGCTAAATTGATTACTTCTGCTGGTTTCAGTGACTACAAGATAACTCCATTTTTGGATTTAAGGTCTGTCATTGAGATCTATCCATTGTAA 2256 0.4242 MPTLRGFEGSIARPSVAANNFEIKPALISMIQNSVQFGGLPSEDPNQHLVMFLQLCDTVKYNGVTEDAIRLRLFPFSLRDRASQWLSSLARGSITTWDQLTQHFLAKYFPPSKSAKLRNDISTFVQWESDSIYEAWERFQDKVRKCPHHDLALWQLLDTFYNGLSSANRSLVESAAGGSIWKKTPTQIQALIEEMALNSYQWQNEHQTRKPSGMHSGDTSTSILSQLESLSKKVETLMVTKSPDPPIICEACGGHGHLSTTCQVGSPFALESEEANYVGNYNQPQYNPYSNTYNLGWKDHPNFRWTNQQGTMAPKRQRTSSSAIPSHSVAETMEQFGVLETITEHLVRAGWELFASIQCDAYLEPTLEFLSTLTVSCENQTIDHPDTIQFCLNRRQFSMSLNEFNVAMGFETADSILLPAYQNAFLDFPSSFVDVNFWGEIGVATHHYNPSSTKSSFIRDPILRWLHRFIAHSIVGRQRSTGVVTKTNLFFLWCLVQGHHCNLGYWFLQSVQKLGKPKGNAKKRYIPVGSYISNLARNLGALHPQAHLVKQMEPIDEDMLNRHGKDAQLITNVMMEKRKGVFTGLESIVDIGGITGTTAKAIAKSFPQMECIVFDLLHVVAGLQGSDNLKYVAGDMFKAIPSADAILMKQWIMHDRNDEECINILKKCKEAITNKGKEGKVIIIDIVMDNEMGDHESIETQLFCDVMLMVLYIGKERTKKEWAKLITSAGFSDYKITPFLDLRSVIEIYPL* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01188 751 Gene3D Vaccinia Virus protein VP39 546 750 IPR029063 -
Rops9g01188 751 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 582 750 IPR016461 GO:0008168
Rops9g01188 751 Pfam O-methyltransferase domain 564 732 IPR001077 GO:0008171
Rops9g01188 751 Pfam ATHILA ORF-1 family 329 492 IPR004312 -
Rops9g01188 751 Pfam Retrotransposon gag protein 73 165 IPR005162 -
Rops9g01188 751 PANTHER O-METHYLTRANSFERASE 544 735 IPR016461 GO:0008168
Rops9g01188 751 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 561 748 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01188 Rops-Chr9 19604803 19618562 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01188 582 750 Monolignol Biosynthesis Gene Families AT1G51990 38.012 6.00e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01188 - - cit:107176892 368.237