Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01183 ATGCACCAGAAGAAGAAGAAGAGGACAACAAGAACATGTCTGTATCTGATATTCTCACTCAGAATCTCAACTGCTCCATCTGTTTTCAATTGCCGGAGAGGCCTGTCACGACTCCGTGTGGGCACACTTTCTGTCTCAAGTGCAGGCAGAGTATCCCTCCCAAAATGGCGAGCCAGCCCCGTATCAATCCTGCAATGGTATTTGTCATTCCATGACCAAGATAAACCCGACCAGCCATGTACCACCGAGCGTGCACAGAAGAATGGTCGTGCAAATGCCGCAAGTGGAAAGATCTTTGTGACTGTGCCTGTTGATCATTTTGGTCCGATCACAGCAGAGAATGACCTTATACGGAATCAGGGTCTGCTGGTTGGTGAATCCTGGCCAGACAGGCAGGAGTGCAGGCAATGGGGGGCTCACTTCATACCTATTGGAGGCACTTGTGGACAGTCAGATCATGGTTCCCAATCTGTTGTTGTCTGTTACGTTGACGATGAAGATCATGGAGAATGGTTTCTCTACACTGGGAAGCACGGGTTGCTTCATGCACGCGCGTCCTTGGGCAACAAGGCCCCCAAGTTAGGTCATGCTTGCTGCAGGCACCATCTCCTCTTGCACACGATGGCTGCCAAGTTCACGTGCAGCACCATGCATGCACCCAACGAATCACAACCTCTAGGTTTTTAA 687 0.5051 MHQKKKKRTTRTCLYLIFSLRISTAPSVFNCRRGLSRLRVGTLSVSSAGRVSLPKWRASPVSILQWYLSFHDQDKPDQPCTTERAQKNGRANAASGKIFVTVPVDHFGPITAENDLIRNQGLLVGESWPDRQECRQWGAHFIPIGGTCGQSDHGSQSVVVCYVDDEDHGEWFLYTGKHGLLHARASLGNKAPKLGHACCRHHLLLHTMAAKFTCSTMHAPNESQPLGF* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01183 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 52 190 IPR045134 -
Rops9g01183 228 Gene3D - 88 222 IPR036987 -
Rops9g01183 228 ProSiteProfiles YDG domain profile. 117 228 IPR003105 -
Rops9g01183 228 SUPERFAMILY PUA domain-like 91 183 IPR015947 -
Rops9g01183 228 SMART G9a_1 112 222 IPR003105 -
Rops9g01183 228 Pfam SAD/SRA domain 120 180 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01183 Rops-Chr9 19415984 19416670 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01183 70 190 C2H2 Transcription Factor Family AT5G39550 65.041 2.96e-46 160