LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops9g01181	ATGGGATCCTACGATGGAGATCATGCTGCCAAACTACTTCGAGCTCAAAGCCACACATGGAATCACATTTTCAACTTCATAAACTCCATGTCCCTTAAATGCGTAGTTGACTTAGGCATACCAGATGTCATACACAACTATAGCAAACCCATGCCACTCTCACAACTCATTGCTTCACTACCAATCCACCCATCCAAAACCTTCTGTATATATCGCTTGATGCGAATCATGATCCATTCTGGCTTCTTCTCTCAACAGACTGTCACCGAGAATGAGCTAGAAGTAGAGTATATGCTAACTGATGCATCTATACTATTGATTAAGAACCATCCTTTGAGTGTGACACCTTTCTTGCATGCCATGCTTGATCCAATTTTGACAAACCCATGGCATCAATTGTCTACATGGTTCAAAAATGATGATCCTACACCGTTTGAAACGACACATGGGATGTTGTTTTGGGATTATGCTGAAAGAGAGCCCAAACTTAATCACTTTTTTAATGATGGCATGGCAAGTGATGCTCGAATTGGTCGCCAATGTGGTGATGGAGAAGTGCAAGGGGAAGTTCACGGGATTGGAATCATTGGTTGA	594	0.4209	MGSYDGDHAAKLLRAQSHTWNHIFNFINSMSLKCVVDLGIPDVIHNYSKPMPLSQLIASLPIHPSKTFCIYRLMRIMIHSGFFSQQTVTENELEVEYMLTDASILLIKNHPLSVTPFLHAMLDPILTNPWHQLSTWFKNDDPTPFETTHGMLFWDYAEREPKLNHFFNDGMASDARIGRQCGDGEVQGEVHGIGIIG*	198

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops9g01181	197	PANTHER	O-METHYLTRANSFERASE	13	177	IPR016461	GO:0008168
	Rops9g01181	197	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	20	197	IPR016461	GO:0008168
	Rops9g01181	197	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	111	177	IPR029063	-
	Rops9g01181	197	Gene3D	-	2	106	IPR036388	-
	Rops9g01181	197	FunFam	Coniferyl alcohol 9-O-methyltransferase	3	106	-	-
	Rops9g01181	197	SUPERFAMILY	"Winged helix" DNA-binding domain	10	111	IPR036390	-
	Rops9g01181	197	Gene3D	Vaccinia Virus protein VP39	107	188	IPR029063	-
	Rops9g01181	197	Pfam	Dimerisation domain	30	77	IPR012967	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops9g01181	Rops-Chr9	19391528	19392121	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops9g01181	30	177	Monolignol Biosynthesis Gene Families	AT5G54160	23.684	4.88e-09	53.1

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops9g01181	-		K16040	gmx:100808660	299.671

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