Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01159 ATGGGCAATAGCAGCATGATAGGCACACCAACGCCGAAAATAGCACAAGTAGGGGCACCTCTTGCAGTTAAAGAGGAAGAGAGTCTCAATCAATCAGGGGGAGAGAGGGGGAGACCAGGTCCATTTTCCTTCACTGAGAGGCATCCCACCACACTATCTTCTCCATCATGGATCTCACGAGGTTTTTCCACCTACAACTACGTGTTATCTTTTGAACACTTCACCTTTGAAACCCCTCTTTCTGGTGTTATGGAGATATCTTTGTTAAATGTACTCTCTAATGGCATATCCTCTTTTTTGCATTTATCATTTTCTGGAAAAATGAACTCGCAACCAGTATTGAAGTATTACCAAAAGGCAGAGAAGGAACTTGGTCTGGCTGTTGATGAGTTGAGGGAGCTTATTGAAAACTGGCATATATTATCTAGCAAATTTTACTTTGTTATGCAAGTTGAACCCTTGATATCAAGAATTCAGGTTTCAGGGCTCAATATTTTACAGCAGCTGAAGGCTTCACAGCAATGTCTCCCTGATGATTTCGGACCTGAAACATCATCAGCCATTAAAGAAGCTATTAAGGAACAACAGGAAGGCGTAGATCCCAGTTCAGAAGTCCTGGCAAAGATTGTTGAGACCCTGAGCCTAAAGTCTAATCAAGAGGTTCTGATTGAGGCTATAGCCCTTGAAAAGCTGAAGGAGAATGCTGAACAAACTGAAAAAAATACAGAAGCTGAATACATTGATCAAATGATCTCTGTTGTAACTCGTATGCATGAGCATCTTGTTATGCTTAAACAAGCTCAGAGCTCTATCCCAGTGTCGGTACCTGCTGATTTTTGCTGTCCCCTCTCTTTGGAGTTGATGACAGATCCAGTCATTGTGGCATCAGGACAAACCTATGAGCGAGCTTTCATCAAGAGCTGGATTGATCTTGGCCTTACTGTTTGTCCAAAGACACGTCAGACTCTGGTTCACACCAACCTAATACCAAACTACACTGTAAAGGCATTAATTGCAAACTGGTGTGAAACAAACAATGTGAAGTTTGTTGAACCCATAAAGTCCACAAGCTTAAATCAACCATCTTTCCTTAATGGGTCTATGGAGTCTGGTTCAGCCAAGGAATCACCTGTTATAACTTCATTTGGTGGAATCCACCAAGAGGGAACATCATCATTGCATCCCCATTCAACTCCAGAAGGCTCCTTAAATGGCATGGTTAATGGGCAGCATGTAGATCTTGTAAGAATATCATCCACAGGTTCAGATGATGGGTCTGCCAGCTCAAATGAAGGGAGTATAGATTCAGTTGACCAATCATTAATGTCACCATCTAGAAGGGAATCTTCCAATGCCTTGAGCTCAGAACAATCTCAAACCCATATTAGAACTGATGATTCCAGAGCGCACACTATTGCAAATTTTCCACAAGGCACACAAGGTGATGACAATCCAGTCTACACTCCAGATTCTTCTGAGGAATTAAATTCTGTGCCAGATGCTGCTGCCATGCCAACTCCTCATAGAGAACCTGAGTTTTCACCCCAATTGGTGGAGCCAAGGTCTCAAAGACAAACTATATGGAGAGGATCTTCAGAGAGATTTGTTCCTAGGATAGTGTCTTCTTCTCCTTCTATTGAAACAAGAGCTGATCTTTCTGGTACTGAAACCCAAGTTAGGAAATTGGTGGAGCAGTTGAAGAGCAATTCTCTTGATACTCAGAAAGAGGCAACATCTGAACTCCGCCTTCTTGCTAAGCACAATACGGATAACAGAATTGTGATTTCAAATTGTGGTGCCATTAGCTTATTAGTTAATTTACTTCAATCAACTGATACAGTGATACAGGAAAATTCTGTCACAGCACTTCTTAATTTATCAATCAATGATAACAACAAAATTGCTATTGCAAATGCTGGTGCAATTGAACCTTTGATTCTTGTCCTTAAGACAGGAAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTGTCAGTTGTTGAGGAAAACAAGATCAGGATAGGGAGGTCTGGTGCAATTGAACCGCTGGTTGATTTATTAGGGAATGGAACTCCTAGAGGGAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGGATAAGATTGTGCAAGCTGGTGCTGTTAAGCACCTTGTAGAGTTAATGGACCCTGCAGCTGGAATGGTTGATAAAGCAGTGGCTGTATTAGCAAATCTTGCCACAATACCAGAAGGAAGAAGAGCAATTGGACAGGAAGGTGGGATTCCTGTTCTGGTTGAGGTTGTGGAGTTGGGTTCTACAAGAGGAAAAGAGAATGCAGCAGCAGCTCTATTACATTTATGCTCAGACAATCACAGATTTTTAAACATTGTGCTCCAAGAAGGAGCTGTGCCTCCATTAGTAGCATTGTCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGGCCCTGGCTCTTCTTAATCAATTTAGAAGCCAAAGACATGGTGGTGGTGGGAGGGCTTGA 2529 0.4219 MGNSSMIGTPTPKIAQVGAPLAVKEEESLNQSGGERGRPGPFSFTERHPTTLSSPSWISRGFSTYNYVLSFEHFTFETPLSGVMEISLLNVLSNGISSFLHLSFSGKMNSQPVLKYYQKAEKELGLAVDELRELIENWHILSSKFYFVMQVEPLISRIQVSGLNILQQLKASQQCLPDDFGPETSSAIKEAIKEQQEGVDPSSEVLAKIVETLSLKSNQEVLIEAIALEKLKENAEQTEKNTEAEYIDQMISVVTRMHEHLVMLKQAQSSIPVSVPADFCCPLSLELMTDPVIVASGQTYERAFIKSWIDLGLTVCPKTRQTLVHTNLIPNYTVKALIANWCETNNVKFVEPIKSTSLNQPSFLNGSMESGSAKESPVITSFGGIHQEGTSSLHPHSTPEGSLNGMVNGQHVDLVRISSTGSDDGSASSNEGSIDSVDQSLMSPSRRESSNALSSEQSQTHIRTDDSRAHTIANFPQGTQGDDNPVYTPDSSEELNSVPDAAAMPTPHREPEFSPQLVEPRSQRQTIWRGSSERFVPRIVSSSPSIETRADLSGTETQVRKLVEQLKSNSLDTQKEATSELRLLAKHNTDNRIVISNCGAISLLVNLLQSTDTVIQENSVTALLNLSINDNNKIAIANAGAIEPLILVLKTGSPEAKENSAATLFSLSVVEENKIRIGRSGAIEPLVDLLGNGTPRGKKDAATALFNLSIFHENKDKIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRRAIGQEGGIPVLVEVVELGSTRGKENAAAALLHLCSDNHRFLNIVLQEGAVPPLVALSQSGTPRAKEKALALLNQFRSQRHGGGGRA* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01159 842 Coils Coil 218 248 - -
Rops9g01159 842 Coils Coil 117 137 - -
Rops9g01159 842 MobiDBLite consensus disorder prediction 1 20 - -
Rops9g01159 842 Gene3D - 737 836 IPR011989 -
Rops9g01159 842 CDD RING-Ubox_PUB 276 328 IPR045210 -
Rops9g01159 842 MobiDBLite consensus disorder prediction 382 405 - -
Rops9g01159 842 Pfam U-box domain 275 345 IPR003613 GO:0004842|GO:0016567
Rops9g01159 842 Pfam Armadillo/beta-catenin-like repeat 672 709 IPR000225 GO:0005515
Rops9g01159 842 Pfam Armadillo/beta-catenin-like repeat 713 749 IPR000225 GO:0005515
Rops9g01159 842 Pfam Armadillo/beta-catenin-like repeat 588 627 IPR000225 GO:0005515
Rops9g01159 842 Pfam Armadillo/beta-catenin-like repeat 629 668 IPR000225 GO:0005515
Rops9g01159 842 SUPERFAMILY RING/U-box 264 352 - -
Rops9g01159 842 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 599 641 IPR000225 GO:0005515
Rops9g01159 842 Gene3D - 631 736 IPR011989 -
Rops9g01159 842 Gene3D - 554 630 IPR011989 -
Rops9g01159 842 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 681 723 IPR000225 GO:0005515
Rops9g01159 842 MobiDBLite consensus disorder prediction 413 460 - -
Rops9g01159 842 MobiDBLite consensus disorder prediction 25 51 - -
Rops9g01159 842 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 722 763 IPR000225 GO:0005515
Rops9g01159 842 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
Rops9g01159 842 MobiDBLite consensus disorder prediction 470 495 - -
Rops9g01159 842 SUPERFAMILY ARM repeat 558 831 IPR016024 -
Rops9g01159 842 SMART arm_5 542 586 IPR000225 GO:0005515
Rops9g01159 842 SMART arm_5 751 791 IPR000225 GO:0005515
Rops9g01159 842 SMART arm_5 588 628 IPR000225 GO:0005515
Rops9g01159 842 SMART arm_5 670 710 IPR000225 GO:0005515
Rops9g01159 842 SMART arm_5 629 669 IPR000225 GO:0005515
Rops9g01159 842 SMART arm_5 711 750 IPR000225 GO:0005515
Rops9g01159 842 SMART arm_5 792 833 IPR000225 GO:0005515
Rops9g01159 842 MobiDBLite consensus disorder prediction 382 525 - -
Rops9g01159 842 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Rops9g01159 842 PANTHER U BOX DOMAIN-CONTAINING 119 830 - -
Rops9g01159 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 354 IPR013083 -
Rops9g01159 842 FunFam RING-type E3 ubiquitin transferase 542 837 - -
Rops9g01159 842 FunFam RING-type E3 ubiquitin transferase 274 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01159 Rops-Chr9 19075035 19086902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01159 235 841 U-box Gene Family AT2G23140 60.781 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01159 - - gmx:100777715 1095.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02283 11 38306092 38314222 Rops9g01159 9 19075035 19086902 PCT