Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01156 ATGTTTGGATGTCCAGAGACAGAAAGATTAGATGGGATAGTGAAGGTCAAATCAGAGGGAGAAGCATCTTGTGAAATGGGAAGGAAGCATTTTTATGGTCCAGCTCCTGGGACAACCTTAAACACAGTAACACCTTGTGCTGCATGTAAGCTTTTGAGAAGAAGGTGTGCTGAAGAATGCCCTTTCTCTCCTTATTTTTCACCACATGAGCCTCAGAAGTTTGCAGCAGTTCATAAAGTGTTTGGTGCAAGCAATGTCTCTAAGATGCTAATGGAGGTGTCTGAGGGTCAAAGAGCTGATGCAGCAAATAGCCTTGTTTATGAAGCTAACTTGAGGTTGAGAGATCCAGTATATGGATGCATGGGTGCAATATCAACTTTGCAGCAACAAGTTCAATCTTTAGAAGCAGAACTACATGCAGTAAGGGCTGAGATACTAAAATACAAATATAGAGAGGCTGCAAGTCTTATTTCTTCTCATGCTGCTTTAGTTTCATCTGGTGAAGCATCAATACCTGCAAACTTACAAGATCTTTCTCAACCTTTTCCTCCTCCTTCTCCATCTCCTGCTCCTCCTCCACCACCAAAACCATTAACTTCATCTTCTGTTATCCTTTCATCCTTGTCTTCATCTTCAACTTCTGTGTACACTCCACCTAAAAGCACAATGAGCCATGGATCCATTTCCAGTGAAAATGTCACATACTTTGTTTAG 714 0.4146 MFGCPETERLDGIVKVKSEGEASCEMGRKHFYGPAPGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVSEGQRADAANSLVYEANLRLRDPVYGCMGAISTLQQQVQSLEAELHAVRAEILKYKYREAASLISSHAALVSSGEASIPANLQDLSQPFPPPSPSPAPPPPPKPLTSSSVILSSLSSSSTSVYTPPKSTMSHGSISSENVTYFV* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01156 237 ProSiteProfiles LOB domain profile. 44 145 IPR004883 -
Rops9g01156 237 MobiDBLite consensus disorder prediction 178 199 - -
Rops9g01156 237 MobiDBLite consensus disorder prediction 174 203 - -
Rops9g01156 237 Coils Coil 124 151 - -
Rops9g01156 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 41 193 - -
Rops9g01156 237 Pfam Lateral organ boundaries (LOB) domain 45 142 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01156 Rops-Chr9 19060883 19062033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01156 26 158 AS2 family AT2G30340 79.104 2.79e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops9g01156 LOB 3.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01156 - - ccaj:109795340 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01156 9 19060883 19062033 Rops9g01156 9 19060883 19062033 ECH