Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01140 ATGGGGGTTGAAGTTTGCATGAATGGTTATTGCAAGAATGGTTCTGCTCGTGAATGGAAGAAGGGGTGGCCTCTTATATCTGGTGGATTCGCCAGGCTCTGCGACAAGTGCGGACATGCCTATGAGAATTCAGTTTTCTGTGATAATTTCCACCGACATGAAACTGGTTGGAGGGAATGCAGCTATTGCAGCAAGCCTATCCACTGCGGATGTATAGTATCAAGGTCTTTGTTTGAGTACCTTGATTTTGGCGGTATATGTTGTGTTATCTGTGTAAAGGCTTCCCGACTTTGTCTGACACAGAATACTGAAAATCCTAATGGGTCTGTTAGATCAACCAACAATATTGCAAGTGATCGACATGCTGAACATATTGATGGTAGACTATTGGTGGATAGTGCTGGTAAGGGAAAACTTATGCAGCTGTGTAGAATTGCTGAAGGTAGTGAATCCAGCCGTTGGCCTCAAGCTCAAAGAGATGGCGAAGTTTCATGTATTGTTCCAAACAGCCAAGAAGTTAAGCATCCATTCAGGGAAGAGGATACAAGACTTTCAAATGTGATGAAACAGTCAAGTCATTCACTAACATTTACTACATTAGAAAATAATAGAACAACATGGGAGAATAAAAGTATGCATGAATTACTTTCACGGAATATTTCTCTGGGAACCTCATCAGGAAATCGTATCCTTCCTTCTTACCCTATATTGCCTAGTTCATCGAAGACAGGGCTTAACATGAATCTTGAAACAAATAAAGGCATGATTTCTCAGGCATGCGTTGCCCGGCTTCCTGCTGAGGGTAGAGGCAATCATCAGTTACTCTCTCGATACTGGCCTAGGATTACCGATCAAGAGCTGAAGCAATTGTCTGGAGATTTGAAGTCTACTGTAGTGCCATTATTTGAGAAGATGTTGAGTGCCAGTGATGCAGGACGAATTGGTCGTCTTGTTCTTCCCAAAGCCTGTGCTGAGGCTTATTTTCCTCCTATTTCACAATCAGAAGGTCTTCCTCTGCAGTTCCAAGATGTCAAGGGGAATGAGTGGACATTTCAATTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTAACCCCTTGCATACAGTCCATGCAATTAAATGCTGGTGATACTGTGATATTTAATCGGATAGACCCTGGGGACAAATTTGTTTTGGGTTTCAGAAGGGCATCATATTCTAAAGATGCACAGGATGCCTCTACATCTGCTCATTCTGATGGCATTTCAACAAAGGAAACAACCTTTTCTGGTGCAACTGAGAATCTGCACTCAGGAAATAGTTATCCTGATCTTCTCCAGTCAAGGAAAGGGAATGGGGAACCTTACCTAAATGAACAAGCAGAACATATGCATTTGGGTACTGGAACTGCTGATTGGCTTCAAAATGAAAATTGTGAGATGATGATGAACAATGATTCATTGCAGCAACCGATGTCAGTTTCAGAGAAGAGGACTTGCAATATTGGGCCTAAAACTAAGAGGTTGCTCATTCATAGTGAAGATGCTATGGAGTTGAGACTTAGTTGGGAGGAAGCACAGGACTTGCTTTGTCCGCCGCCTAGTGTTGAGCCAAGCATTGTAACGATTGAGGACCAAGTAATTGAAGAATATGAGGAGCCTCCTGTTTTTGGGAAGAGCACTACATTTGATGCCTGTCCACCTGGGTCTTCAGGTTCTGCATCAGAGCAGCTAAGTCCAAAGGAATCAGAAAATCTTCTGATAACCAACAAAGAACGTGAGCCTTTTGGCTTAGATGCTCTTGCCAGTGCAGCAGGTTTGGGAGATAATATTGTTGACCCTACTGAATTATCAGCTGGAGTCTCCAACAAACATCCAAGGCACCGTCCTGGATGCACTTGTATTGTGTGCATTCAACCTCCAAGTGGAAAAGGGAGACACAAGCCTACATGTACTTGTCATGGATGCAAGACTGTGAAGCGCCGGTACAAAACCCGGATGCATAATAAGAAACAACACCAATCAAAATCTGAAGCAGATGCTGTCCCAAAAGATCAAATTCATCACAGGGATGAGCCAGATATCAATGCTGCATCAAGGGAAGATACAAGTCCCCTGGAGAAAGAGGGAAGCCTAAACAAAGGTAGGCTTCAGATGGGTAAGCTCAGTCTTGGACAAATAGATCTGAATAGTGATCCCAATCTTGAAGATATGCAATGGGATATATAA 2223 0.4283 MGVEVCMNGYCKNGSAREWKKGWPLISGGFARLCDKCGHAYENSVFCDNFHRHETGWRECSYCSKPIHCGCIVSRSLFEYLDFGGICCVICVKASRLCLTQNTENPNGSVRSTNNIASDRHAEHIDGRLLVDSAGKGKLMQLCRIAEGSESSRWPQAQRDGEVSCIVPNSQEVKHPFREEDTRLSNVMKQSSHSLTFTTLENNRTTWENKSMHELLSRNISLGTSSGNRILPSYPILPSSSKTGLNMNLETNKGMISQACVARLPAEGRGNHQLLSRYWPRITDQELKQLSGDLKSTVVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPLQFQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLNAGDTVIFNRIDPGDKFVLGFRRASYSKDAQDASTSAHSDGISTKETTFSGATENLHSGNSYPDLLQSRKGNGEPYLNEQAEHMHLGTGTADWLQNENCEMMMNNDSLQQPMSVSEKRTCNIGPKTKRLLIHSEDAMELRLSWEEAQDLLCPPPSVEPSIVTIEDQVIEEYEEPPVFGKSTTFDACPPGSSGSASEQLSPKESENLLITNKEREPFGLDALASAAGLGDNIVDPTELSAGVSNKHPRHRPGCTCIVCIQPPSGKGRHKPTCTCHGCKTVKRRYKTRMHNKKQHQSKSEADAVPKDQIHHRDEPDINAASREDTSPLEKEGSLNKGRLQMGKLSLGQIDLNSDPNLEDMQWDI* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01140 740 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 737 - -
Rops9g01140 740 ProSiteProfiles B3 DNA-binding domain profile. 302 403 IPR003340 GO:0003677
Rops9g01140 740 MobiDBLite consensus disorder prediction 663 715 - -
Rops9g01140 740 FunFam B3 domain-containing transcription repressor VAL1 280 407 - -
Rops9g01140 740 MobiDBLite consensus disorder prediction 429 453 - -
Rops9g01140 740 SUPERFAMILY DNA-binding pseudobarrel domain 300 403 IPR015300 -
Rops9g01140 740 SMART B3_2 302 403 IPR003340 GO:0003677
Rops9g01140 740 CDD B3_DNA 300 401 IPR003340 GO:0003677
Rops9g01140 740 MobiDBLite consensus disorder prediction 429 445 - -
Rops9g01140 740 MobiDBLite consensus disorder prediction 558 579 - -
Rops9g01140 740 MobiDBLite consensus disorder prediction 562 579 - -
Rops9g01140 740 Pfam B3 DNA binding domain 302 402 IPR003340 GO:0003677
Rops9g01140 740 Gene3D - 280 406 IPR015300 -
Rops9g01140 740 MobiDBLite consensus disorder prediction 670 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01140 Rops-Chr9 18805176 18813250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01140 1 737 B3 DNA Binding Superfamily AT2G30470 42.964 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops9g01140 B3 3.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01140 K09287 - gmx:100799429 924.85