Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01133 ATGTCCGTACAGTCAACTCTGAAGCTTGAAACCCCAAGTTCAGTTTTTGAAGGTAACTCACCATGCAAAACAAGGAGGAAAACCCAAAGGAAGCTTGTTAGGATCCTAGTCACCGACCATGATGCCACTGATTCTGACTCCTCTGGCGATGAAGATGAAGAAAACAATCCAAGAAGGACAAGAAGAGTGAAGAGGGAAATCACCCACATCAACATGAACCTTCCTTTCTCAGATTCCCCTTCTTCTTCTTCTTCCTTCTCTTCTTCTCTCACTAGCTCTTTCTCTTCTTCGTCGGAGCAAAACCTCAGAAAGTGTAAGAAACCCAAGAAACAACCATCCTCTGCCGCCGTGCGCCGTCACAACAAGTTCCGTGGCGTCCGTCAACGACCGTGGGGCCGGTGGGCCGCCGAGATCCGTGACCCGACACGCCGGAAAAGGCTCTGGCTTGGAACCTTCGACACGGCGGAGGAAGCCGCGTCAGAGTACGACAAGGCGGCGGTGAAACTGAAGGGTCCTAACGCCGTCACCAACTTCCCCAAAACTTCGCCGGAGGTTATGGCGCCGCCTCCTTCCGGTGCCTTCGTTGATCAGAGCACTGACGGCGGTGCGTCTTCTTCCTCCGACGTTTTGGCCTCGCCGACATCCGTCTTGTTGCCCGACGAGTGTGACTCGACGCCGTTCGACGGTTACGGCGACGTGGACGCGCTCGGGTTTCACATTGACGTGCCGTTAAGTTTGCCGCCGTTAAGTTTGCCGGAACTTAACGTTACTGCGCTGACGTGTCATCAGAAGGAAGAGGTGTTCGATGAGTTTGATCTCGATGAATTCATGACGTGGCCCTACTAA 846 0.5343 MSVQSTLKLETPSSVFEGNSPCKTRRKTQRKLVRILVTDHDATDSDSSGDEDEENNPRRTRRVKREITHINMNLPFSDSPSSSSSFSSSLTSSFSSSSEQNLRKCKKPKKQPSSAAVRRHNKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAASEYDKAAVKLKGPNAVTNFPKTSPEVMAPPPSGAFVDQSTDGGASSSSDVLASPTSVLLPDECDSTPFDGYGDVDALGFHIDVPLSLPPLSLPELNVTALTCHQKEEVFDEFDLDEFMTWPY* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01133 281 PIRSF PTI6 1 281 IPR017392 GO:0003700
Rops9g01133 281 MobiDBLite consensus disorder prediction 1 22 - -
Rops9g01133 281 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
Rops9g01133 281 SMART rav1_2 122 185 IPR001471 GO:0003700|GO:0006355
Rops9g01133 281 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
Rops9g01133 281 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Rops9g01133 281 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Rops9g01133 281 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 217 - -
Rops9g01133 281 MobiDBLite consensus disorder prediction 107 124 - -
Rops9g01133 281 MobiDBLite consensus disorder prediction 72 101 - -
Rops9g01133 281 SUPERFAMILY DNA-binding domain 122 180 IPR016177 GO:0003677
Rops9g01133 281 CDD AP2 122 179 IPR001471 GO:0003700|GO:0006355
Rops9g01133 281 MobiDBLite consensus disorder prediction 1 124 - -
Rops9g01133 281 FunFam Ethylene-responsive transcription factor 2 121 180 - -
Rops9g01133 281 Gene3D AP2/ERF domain 121 181 IPR036955 GO:0003700|GO:0006355
Rops9g01133 281 MobiDBLite consensus disorder prediction 179 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01133 Rops-Chr9 18569232 18571022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01133 23 217 AP2-EREBP Transcription Factor Family AT4G27950 45.771 1.13e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops9g01133 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01133 K13434 - gmx:100800489 311.997