Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01123 ATGGATTTCATTGGCCTCCCCAAAGCTCAAGGAAAGGACAACATACTAGTGGTGGTGGTGGTGGATAGGCTCACTAAGTATGCCCATTTCCTCCCCCTAAGTCACCCTTTTATAGCTCAAGATGTGGCAGAACTCTTCCTCGAGGAAATTGTTAGGTTGCATGGTTTCCTTACTACTATTGTTTTTGATTGGGACAAAATATTCCTCAGCTGCTTGGAATTATCCACAGCACTCCAAAACAATTTGCAGTCTTCAAATCCATCATTTATCAAGTCAATGGTTCGGTCTCATGTTTATAGCTGTTTTTGGTTGAGTCTTCCTTCTAAATTTTGTGAGGAATATCTTCCAAAAACTTTGTATGACATGATTTTAGAGGATGAGAATGGCTCAGAATATGAAGCTGGGCTGAGTGGTGGCTGGAGAGCATTTGCATTGGATCATAAGTTGGATGATGGTGATGCACTTGTTTTTCAATTGACTGAGGCAGCTAGATTTAACGTAATCTATATTATCAGTTCTTCTGTAACTGTCTTAACTTCTAAGGTTGTTATACTTGCCCTATCATCATTGATTGAACAATAA 582 0.3935 MDFIGLPKAQGKDNILVVVVVDRLTKYAHFLPLSHPFIAQDVAELFLEEIVRLHGFLTTIVFDWDKIFLSCLELSTALQNNLQSSNPSFIKSMVRSHVYSCFWLSLPSKFCEEYLPKTLYDMILEDENGSEYEAGLSGGWRAFALDHKLDDGDALVFQLTEAARFNVIYIISSSVTVLTSKVVILALSSLIEQ* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01123 193 CDD B3_DNA 87 172 IPR003340 GO:0003677
Rops9g01123 193 SUPERFAMILY DNA-binding pseudobarrel domain 83 171 IPR015300 -
Rops9g01123 193 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 74 173 IPR044837 -
Rops9g01123 193 SUPERFAMILY Ribonuclease H-like 1 118 IPR012337 -
Rops9g01123 193 Pfam B3 DNA binding domain 89 171 IPR003340 GO:0003677
Rops9g01123 193 ProSiteProfiles B3 DNA-binding domain profile. 89 173 IPR003340 GO:0003677
Rops9g01123 193 Gene3D - 74 173 IPR015300 -
Rops9g01123 193 SMART B3_2 89 174 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01123 Rops-Chr9 18421044 18421762 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01123 69 180 B3 DNA Binding Superfamily AT5G58280 49.580 1.16e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops9g01123 B3 1.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01123 - - aprc:113874447 172.94