Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01120 ATGTCTTCCGGTTCAAGATTCAACCAAGCTTCAACCAACTCCAATGGATCCCGTGGAAGGAGAGGTCAACAATATTGCTTCTATGGAGAATTTGTTGAGATGCACACTGCTTGGACAATGGCGAATCCGGGAAGGCGGTTCTTGGGTTGCCTTAACTATAAGATGGCAAAGGGTTGCACCAACAACAAATATGAAGAAGCTAGAAAACAAAGACTTGAAGAAAACAAGAAGAGGTTTGAGGATTTGGGAATTTCCAAGATTTCCAAAAGTTTGACTGAAATCTCAAGTTCTGCAAAGAATACCCTGCATCATGTTCCTAAAGTGAAACTAAAGACTAATGGTGGTGTAGTGGAACCTAGGCGCTCTTCTCGTGTGCGAAACCCAGTTCCAACATATCGTGATGAAGTTAGCATAGACCTTCCACCTTTGCGGAAGAGGTCAAGGTCAAATTCATCATCATGGGGAAGTTATGTTGCAAGGCCACTAGATGAAATCAAAGAGGCTACAGAAGAAGAAAGAATTCGTGCTCTGGATGCTGCAGAGGCACTCCAAAACAATTTGCAGTCTTCAAATCCATCATTTATCAAGTCAATGGTCCGGTCTCATGTTTATAGCTGTTTTTGGTTGAGTCTTCCTTCTAAATTTTGTGAGGAATATCTTCCAAAAACTGTGTATGACATGATTTTAGAGGATGAGAATGGCTCAGAATATGAGGCTGTTTACATTGGCAAAAGAAGTGGGCTTAGTGGTGGCTGGAGAGCATTTGCATTGGATCATAAGTTGGATGATGGTGATGCACTTGTTTTTGAATTGATTGAGGCAGCTAGATTTAAGATTTATATTGTTAGAGCATTTCCTGATTTGGTCGAAGAAGATGGAAAGGATACTTTGGTGGAAGAAGGAAATATGCATGCAACCAAAGCAACAAAAGTTCAAAAAGCTGCCAGTAATCGTGAATCAGAATCCAACAAGAGGAAAAAGCCAAAACAGACCATTGTATATGAAAATAATGAATCAGAGAGTTTTCAAGAACATCTGTCAGAAAGTAGCATTGACAACAAAGTCAAACCACAGGGGGAAAGTCCAATTAAGAAAACTAGATCTTCTCAGAGAAAAATGAAAAAGAAATCTAAACTGCCTGCTACTGCTGAGTCTAAAGGGGAAGCACAAATTGAAACAGTGAAACCAAAGGCAGATATTAAGATGTCAAACATGACAAGGAAGTCAAAAGAAGGTATTGTACTTGAAATCGGTGACTCGGGCAATACTGAGCAGCTTCTTTTGGAAAATAATGTTGTCAAACCAAGAGGGGCTAACCTGAGCAAGAAGAAAGAATTTTTTCAGGATGCTGATGGTGAGTTAAAGAAAGTTGAACCAGTTAAACAAGAGTCAAAGTGTTATCAAAAAGCGGCCATGGCGGTGCTACGGCGCCATGGCTTGGCAGATTTTGAAGAAATTGCCATACTACAAGCGAGGAGGGATTGA 1485 0.4034 MSSGSRFNQASTNSNGSRGRRGQQYCFYGEFVEMHTAWTMANPGRRFLGCLNYKMAKGCTNNKYEEARKQRLEENKKRFEDLGISKISKSLTEISSSAKNTLHHVPKVKLKTNGGVVEPRRSSRVRNPVPTYRDEVSIDLPPLRKRSRSNSSSWGSYVARPLDEIKEATEEERIRALDAAEALQNNLQSSNPSFIKSMVRSHVYSCFWLSLPSKFCEEYLPKTVYDMILEDENGSEYEAVYIGKRSGLSGGWRAFALDHKLDDGDALVFELIEAARFKIYIVRAFPDLVEEDGKDTLVEEGNMHATKATKVQKAASNRESESNKRKKPKQTIVYENNESESFQEHLSESSIDNKVKPQGESPIKKTRSSQRKMKKKSKLPATAESKGEAQIETVKPKADIKMSNMTRKSKEGIVLEIGDSGNTEQLLLENNVVKPRGANLSKKKEFFQDADGELKKVEPVKQESKCYQKAAMAVLRRHGLADFEEIAILQARRD* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01120 494 SMART B3_2 194 285 IPR003340 GO:0003677
Rops9g01120 494 MobiDBLite consensus disorder prediction 301 390 - -
Rops9g01120 494 MobiDBLite consensus disorder prediction 1 20 - -
Rops9g01120 494 Coils Coil 166 186 - -
Rops9g01120 494 ProSiteProfiles B3 DNA-binding domain profile. 194 285 IPR003340 GO:0003677
Rops9g01120 494 Gene3D - 168 285 IPR015300 -
Rops9g01120 494 MobiDBLite consensus disorder prediction 317 333 - -
Rops9g01120 494 Pfam B3 DNA binding domain 194 282 IPR003340 GO:0003677
Rops9g01120 494 SUPERFAMILY DNA-binding pseudobarrel domain 188 283 IPR015300 -
Rops9g01120 494 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 89 284 IPR044837 -
Rops9g01120 494 CDD B3_DNA 192 283 IPR003340 GO:0003677
Rops9g01120 494 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01120 Rops-Chr9 18393163 18408849 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01120 64 284 B3 DNA Binding Superfamily AT5G58280 50.201 8.93e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops9g01120 B3 1.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01120 - - gmx:100786265 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01120 9 18393163 18408849 Rops9g01120 9 18393163 18408849 ECH