Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01110 ATGCTTGCTGCTGCTGCTTCTGCTTCTAGGCACCTTCTTCAACGTGATGCCAGAACCAACGTTAACGGCGGCAACAAAGTTCGGTTGCTTTTAACTGCTTCTGGCATCACCATCAGCTACCCATTTCGCATTTCAAGAGGTTACAGTTACAGTTACGGTTATGGAGTTAGTTTGAATAACCGTCAACCCAGAACATGCCCAAGTTTGCTTTTTGCTGTAAAGGGGTTTCTCTCTGATTCATCATCATCATCATCTTCTGCCAGAGTAACCAGACCTTACTTACCACTACCTAGTTCGACGGTAGATGGGAGAGCATTGTTTTCAACTTCAACTAAAACTGATGATGGAAGCCAGAACCAAAAGGCTGCTTCCACTGTTGCTAAATCACCATCAGGGGAACAAGTTGCTGATATTAAGATCCTTCGTACACTTGCAAGTTACCTTTGGATGAAAGATAATCCTGAATTTCGGTTTCGGGTTATTGCTGCTTTGTTTTTACTTGTTGGTGCTAAGGTTTTGAATGTTCAAGTCCCTTTCTTATTCAAACTTGCAGTTGATTGGTTGAATACTGCCTCAGGCAATGCTGCTGCTCTTGCTTCGAATTCGACTGTGATGGCTTTATTTGCGACCCCTACTGCAGTTTTGATTGGATATGGGATTGCACGTTCAGGAGCTTCTGCTTTCAATGAACTGCGGACTGCTGTATTTTCTAAGGTAGCACTGCGAACAATTCGATTAGTATCAAGGAAGGTCTTCTCACATTTGCATGACCTTGACCTTCAGTATCATCTAAGTCGAGAAACTGGTGCATTAAATCGAATAATTGATCGTGGTAGTCGTGCAATAAATTTCATTCTCTCCTCTATGGTGTTCAATGTAGTACCCACCATATTAGAGATATCTATGGTATCAGGTATACTGGCCTATAAATTTGGAGCCCCTTTTGCATGGATTACTTCCCTATCAGTTGCTGCTTATGTTACTTTTACACTGACTATCACACAGTGGAGGACTAAGTTCAGGAAAGTCATGAATAAGGCTGACAATGATGCTAGTACAAGGGCTATTGACTCACTTATTAATTATGAGACTGTCAAATATTTCAATAATGAAGTCTATGAAGCTGATAATTATGACAAATACCTAAAGAGGTATGAGGATGCTGCTCTAAAAACCCAACGCAGTCTTGCTCTGTTGAACTTTGGTCAAAATGTTATATTTAGTACTGCTCTTTCAACAGCAATGGTGCTGTGTTCTCATGGGATCATGGATGGCACGATGACTGTTGGTGATTTGGTGATGGTGAATGGGCTTCTCTTCCAACTATCTCTTCCACTCAATTTCCTTGGTAGTGTTTATCGTGAGACTATACAGAGTCTAGTTGACATGAAATCCATGTTTCAGTTACTTGAGGAAAGAGCAGACATCAAGGATAAAGACAATGCAAAGCCTCTGAGATTTAATGGGGGGAGCGTCCAATTTGAGGATGTACATTTTAGTTACCTGTCAGAAAGGAAGATACTAGATGGAATATCACTTGTTCTACCAGCTGGTAAAAGTGTTGCAATTGTTGGGACTAGTGGAAGTGGAAAATCAACCATTCTTAGATTGCTATTCAGGTTTTTTGATCCTCATTCTGGAAGTATAAAGATAGATGATCAAGATATTCGGGAGGTAACCCTTGAGAGTTTGCGGAAGTGTATTGGTGTTGTTCCACAGGATACTGTACTTTTCAATGATACGATATTTCATAACATTCACTATGGTCGGCTTTCAGCAACAAAAGAGGAGGTCTATGAAGCTGCTCGGCAAGCAGCAATTCATGATACTATCATGAGCTTTCCTGATAAATATTCAACTGTTGTGGGAGAGCGAGGGCTCAAGTTAAGTGGTGGTGAGAAACAACGTGTTGCCCTAGCTCGTGCATTCTTAAAAGCACCTGCAATATTGTTGTGTGATGAAGCTACAAGTGCTCTTGACAGCACAACAGAAGCAGAGATTTTAAGTGCATTAAAGTCGGTAGCAAATAACCGAACTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGATGAGATCATTGTTTTGGAAAATGGAAAGGTGATTGAGCAAGGACCACATGAAGTGCTCTTAACAAATGCAGGAAGATATGCACAACTTTGGGGACAACAAAGTAACACGGTTGATGCAATTGATACAGCTATCAAACTGGGAGCATAA 2229 0.41 MLAAAASASRHLLQRDARTNVNGGNKVRLLLTASGITISYPFRISRGYSYSYGYGVSLNNRQPRTCPSLLFAVKGFLSDSSSSSSSARVTRPYLPLPSSTVDGRALFSTSTKTDDGSQNQKAASTVAKSPSGEQVADIKILRTLASYLWMKDNPEFRFRVIAALFLLVGAKVLNVQVPFLFKLAVDWLNTASGNAAALASNSTVMALFATPTAVLIGYGIARSGASAFNELRTAVFSKVALRTIRLVSRKVFSHLHDLDLQYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVAAYVTFTLTITQWRTKFRKVMNKADNDASTRAIDSLINYETVKYFNNEVYEADNYDKYLKRYEDAALKTQRSLALLNFGQNVIFSTALSTAMVLCSHGIMDGTMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKSMFQLLEERADIKDKDNAKPLRFNGGSVQFEDVHFSYLSERKILDGISLVLPAGKSVAIVGTSGSGKSTILRLLFRFFDPHSGSIKIDDQDIREVTLESLRKCIGVVPQDTVLFNDTIFHNIHYGRLSATKEEVYEAARQAAIHDTIMSFPDKYSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSVANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGPHEVLLTNAGRYAQLWGQQSNTVDAIDTAIKLGA* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01110 742 FunFam ATP-binding cassette sub-family B member 7 132 480 - -
Rops9g01110 742 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 52 723 IPR039421 -
Rops9g01110 742 Gene3D - 484 738 IPR027417 -
Rops9g01110 742 CDD ABCC_ATM1_transporter 492 727 - -
Rops9g01110 742 Pfam ABC transporter transmembrane region 160 445 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g01110 742 SMART AAA_5 517 703 IPR003593 GO:0016887
Rops9g01110 742 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 492 726 IPR003439 GO:0005524
Rops9g01110 742 CDD ABC_6TM_ATM1_ABCB7 163 466 - -
Rops9g01110 742 Gene3D ABC transporter type 1, transmembrane domain 147 482 IPR036640 GO:0005524|GO:0016020
Rops9g01110 742 MobiDBLite consensus disorder prediction 107 128 - -
Rops9g01110 742 SUPERFAMILY ABC transporter transmembrane region 155 471 IPR036640 GO:0005524|GO:0016020
Rops9g01110 742 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 161 458 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g01110 742 FunFam ABC transporter B family member 25 484 738 - -
Rops9g01110 742 ProSitePatterns ABC transporters family signature. 629 643 IPR017871 GO:0005524|GO:0016887
Rops9g01110 742 Pfam ABC transporter 508 657 IPR003439 GO:0005524
Rops9g01110 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 727 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01110 Rops-Chr9 18216169 18235519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01110 330 727 Calmodulin-binding Proteins AT2G36910 36.186 3.07e-62 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01110 K05662 - gmx:100779975 1218.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01110 9 18216169 18235519 Rops9g01110 9 18216169 18235519 ECH