Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01097 ATGAAGCTTTCAACATCAGGGATGAGTCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGCGCGGGTCCCTTGGTTTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAAGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAAAGAAGTTGATGGGCACATTCCCAATTATCCCAGCTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACACTACAGCCATTGACTCCGCAAGAGCAGAAAGATACATTTCTTCCTATGGAGTTGGGCATTCCAAGTAAGCAGCCCTCAAATTATTTTTGCAAGACATTAACTGCAAGTGACACCAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCGCAGCAACCACCTTGCCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAATGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACAACAGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTTGTGGCTGGGGATTCTGTGCTTTTCATTTGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAATCGGCCACAAACTGTTATGCCATCATCGGTTCTGTCCAGTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCTCATGCTGCAGCAACTAATAGCTGTTTTACAGTATTCTATAATCCAAGGGCTAGTCCATCCGAGTTCGTCATACCACTTTCAAAATATATCAAAGCTGTGTATCATACACGTGTTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGCGTCCGCAGGTACATGGGTACAATAACTGGCATAAGTGACCTGGATCCTGTTCGTTGGCCGAATTCTCATTGGCGATCTGTTAAGGTTGGTTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGAGTATCATTATGGGAAATTGAGCCTTTAACAACATTTCCAATGTATCCATCTCTATTTCCCCTCAGATTGAAACGACCATGGCATCCTGGCACTTCTTCTTTTACTGATGGCAGAGATGATGCAACTAATGGGCTAATGTGGCTTAGAGGTGGGCCTGGTGATCAAGGTCTCAATTCCCTGAATTTTCAAGGTGCTGGTATGTTGCCCTGGATGCAGCATAGACTGGATCCAACTTTGCTCGGAAATGATCATAATCAGCAATACCAGGCCATGTTGGCAGCTGGTTTGCAGAACCTCGGGAGTGGAGATCTATTGAGGCAGCAAATGATGAATTTTCAACAGCCTTTTAATTATCTTCAACAATCAGGAAATCCCAATCCTCATCTGCAGCTTCAGCAGCAGCAAGCAATTCAACAATCTGTATCTTCTAATATCCTGCAGCCACAAGCCCAAGTATTGTCCGAGAACCTGTCTCAGCACCTCCTTCAGAAATCACACAACAATCGGGAAGACCAAACACAGCAGCAGCAACACACTTATCAAGATACCCTTTTAGTTCAAGGTGATCAACTCCATCAGAGGCAACACTCCAGTTTGCCTTCACCATCATATTCAAAACCAGATTTCATGGATTCAAGCATAAAGTTCTCTGCTTCAGTTTCGCCAGGACAAAACATGCTTGGTTCACTTTGTACTGAAGGGAGTGGCAATCTCTTGAATTTATCCAGAAGTGGTCAGTCCATGCTGACTGAACAGTTACCCCAACAATCATGGGCCCCAAAGTATACACCTTTGCAGGTCAATGCCTTTAGCAACTCAATGTCACATGCGCAATATTCTGGAAAGGATACTGCAATGGTGCCTCCACATTGTAACTCAGATACCCAAAATCCTATTCTATTTGGGGTCAATATTGATTCATCTGGCCTTCTGCTCCCTACCACTGTCCCTCAATATTCTAATGCATCAGCTGATACTGATGCATCAACAATGCCATTAGGAGGGGAGTCTGGATTCCAGAATCCTCTATATCCTTGCATGCAAGATTCATCAGAGTTGTTGCAAAGTGCAGGGCAAGTTGACCCCCAAAACCAGACACGAACATTTGTCAAGGTATACAAATCTGGTTCAGTAGGGCGCTCACTTGACATCTCCCGGTTCAGCAGCTATCATGAGCTGCGAGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAATTAGAAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTATATCAAGATACTTTCTCCTGAAGATATTCAGAAAATGGGACCAAGTTCAGGACAAAGGGTGAATAGCAGTGGTGCAGAATCTCATGAAATTGTTTCTGGACTCCCATCAATAGGCTCACTTGAATACTGA 2514 0.4471 MKLSTSGMSQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPCQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFTDGRDDATNGLMWLRGGPGDQGLNSLNFQGAGMLPWMQHRLDPTLLGNDHNQQYQAMLAAGLQNLGSGDLLRQQMMNFQQPFNYLQQSGNPNPHLQLQQQQAIQQSVSSNILQPQAQVLSENLSQHLLQKSHNNREDQTQQQQHTYQDTLLVQGDQLHQRQHSSLPSPSYSKPDFMDSSIKFSASVSPGQNMLGSLCTEGSGNLLNLSRSGQSMLTEQLPQQSWAPKYTPLQVNAFSNSMSHAQYSGKDTAMVPPHCNSDTQNPILFGVNIDSSGLLLPTTVPQYSNASADTDASTMPLGGESGFQNPLYPCMQDSSELLQSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGPSSGQRVNSSGAESHEIVSGLPSIGSLEY* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01097 837 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Rops9g01097 837 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 808 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops9g01097 837 FunFam Auxin response factor 713 808 - -
Rops9g01097 837 FunFam Auxin response factor 292 364 - -
Rops9g01097 837 Gene3D - 292 364 - -
Rops9g01097 837 SMART B3_2 128 230 IPR003340 GO:0003677
Rops9g01097 837 SUPERFAMILY CAD & PB1 domains 716 793 - -
Rops9g01097 837 FunFam Auxin response factor 126 230 - -
Rops9g01097 837 Gene3D - 714 808 - -
Rops9g01097 837 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Rops9g01097 837 ProSiteProfiles PB1 domain profile. 718 803 IPR000270 GO:0005515
Rops9g01097 837 CDD B3_DNA 127 228 IPR003340 GO:0003677
Rops9g01097 837 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops9g01097 837 Gene3D - 126 229 IPR015300 -
Rops9g01097 837 Pfam AUX/IAA family 714 808 IPR033389 -
Rops9g01097 837 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01097 Rops-Chr9 17989156 17998393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01097 98 808 B3 DNA Binding Superfamily AT5G37020 69.764 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops9g01097 AUX_IAA 1.7e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01097 - - gmx:100780393 1567.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01097 9 17989156 17998393 Rops9g01097 9 17989156 17998393 ECH
Rops11g03381 11 64934115 64942489 Rops9g01097 9 17989156 17998393 PCT