Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01084 ATGACAGTGAAGCTCTGTTCAGAACCGTCAGGCGAAGGTGACGGTGGTTTCGTCAGCGGCGGCACTGGTGATCAAGAACTTGAAGAACATCTAGCACAATGTCGATATTTCACACTCAATGATGTTAGAGATTATCGGAACCTGCGTTTCTGTTGGCTGCACCGTCGATGGGGCAGATCTGTTTGGGAGGTACTAGTGGTATCATATTTTGTAGATTTTCAGTTTAGGTACTCTACTGGGGCCTTTGCAGCTCTTAGTTCTTTTCCAGTTGGGCTGAAGCTGGTGTTTTTGCAGAATTGGGTTGTTGTAGCGGTGGAGTTGATGCTGGTTTTGCTTATACTTAGCAGCTCATTGCATTGCAGCAGGCCTGATGTGTGGCATTTTAAAATTCTGATTTCAACTAAACCACTTGTGTCTCTTGAAAATCATAGCCAGAAGGTACAAGATGAAGAAGCACAAAGACTTGAGGACAAAAATGATAAGGTTAGACTTGAGGACAATTATGATCCCATGACTGGATGGATGCATGGAGCTCAAATGGTCACATTTAATATGCAGGTTGGCATTCAAGATGTTAGGGCAGAGGTTATGCCTGCAAGAAAGGCTGATGTTGTTCGTTCATTCCAAAAAGATGGAAGTATAGTTGCAATGGTAGGTGATGGTATCAATGAGTCTCCCGCATTAGCTGCTGCAGATGTTGGTATGGCAATTGGGGCTGGTACAGATATTGCAATAGAAGCTGCTAACTATGTGTTGATGAGGGATAATTTGGAAGATGTGATCACAGTCATTGATCTTTCTAGGAAGACCTTTTCTCGTATACGATTGAATTATGTATTCGCGATGGCCTATAATATTATTGTTGTACCGATTCTTCTTTGGGGTTTTATTTCCTTCATTGGGGATCGAGTTGCCGCCATGGGTTGCTGGTGCATGCATGGCTCTCTCATCCGTGAGTGTTGTGTGCTCTTCTTTGCTTCTTAG 984 0.4339 MTVKLCSEPSGEGDGGFVSGGTGDQELEEHLAQCRYFTLNDVRDYRNLRFCWLHRRWGRSVWEVLVVSYFVDFQFRYSTGAFAALSSFPVGLKLVFLQNWVVVAVELMLVLLILSSSLHCSRPDVWHFKILISTKPLVSLENHSQKVQDEEAQRLEDKNDKVRLEDNYDPMTGWMHGAQMVTFNMQVGIQDVRAEVMPARKADVVRSFQKDGSIVAMVGDGINESPALAAADVGMAIGAGTDIAIEAANYVLMRDNLEDVITVIDLSRKTFSRIRLNYVFAMAYNIIVVPILLWGFISFIGDRVAAMGCWCMHGSLIRECCVLFFAS* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01084 327 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 184 315 - -
Rops9g01084 327 SUPERFAMILY HAD-like 186 299 IPR036412 -
Rops9g01084 327 Gene3D - 174 286 IPR023214 -
Rops9g01084 327 PRINTS P-type cation-transporting ATPase superfamily signature 218 237 - -
Rops9g01084 327 PRINTS P-type cation-transporting ATPase superfamily signature 241 253 - -
Rops9g01084 327 SUPERFAMILY PLC-like phosphodiesterases 117 186 IPR017946 GO:0006629|GO:0008081
Rops9g01084 327 PRINTS H+-transporting ATPase (proton pump) signature 249 274 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops9g01084 327 PRINTS H+-transporting ATPase (proton pump) signature 218 234 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops9g01084 327 PRINTS H+-transporting ATPase (proton pump) signature 190 206 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops9g01084 327 Coils Coil 140 167 - -
Rops9g01084 327 Pfam haloacid dehalogenase-like hydrolase 187 232 - -
Rops9g01084 327 NCBIfam HAD-IC family P-type ATPase 194 304 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops9g01084 327 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 167 186 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01084 Rops-Chr9 17768477 17773473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01084 186 291 Primary Pumps ATPases AT5G44790 83.962 1.80e-53 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01084 K17686 - gmx:100798164 192.2