Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01068 ATGGAGGAGCAGGAACAACCAAACCTTGAAAGCTTCTTAACATGGGCAGCACAACTTGGAATATCAGATTCGACAAACACCAAACAACCTCAATACTCTCTTTCATGTTTGGGTCATGCTCTTTGCGTCTCTCACTTTCCTCACTCTGGCGGGAGAGGTTTGGGTGCTGTGAGAGACCTTAGGAGGGGAGAAATTATTCTCAGAGTTCCAAAATCTGCTTTAATAACAAGTGAGAGTGTTTTGGAAGATAAAAAGCTCTGCGTTGCTGTCAATAGGCACTCTTCACTCTCCTCAACTCAGATATTGATTGTTTGCTTGTTGTATGAAATGGGTAAAGGAAAGACTTCAAGGTGGTATCCTTACCTCATGCATTTGCCGCACAGTTATGACGTACTAGCCACGTTTGGTGAATTTGAGAAACATGCTCTGCAAGTTGATGAGGCTATGTGGGTCGCGGAAAAAGCCATACTAAAAGTCAAATCAGAGTGGAAAGAAGCTCATGCTTTGATGGAAGATCTCATGTTTAAGCCCAGGCTTTTAACATTTAAGACTTGGGTTTGGGCTGCTGCAACGATATCTTCCCGGACGTTGCATATACCATGGGATGAAGCTGGTTGTTTATGCCCTGTGGGTGACTTATTTAATTATGATGCACCTGGAGAGGAGCCATCTGGTATTGAGGATGTAGAGCATTTGCTATCCAACTCTTCCATCCATGTTGCTGCCTTATCAAATGGAGACAAGAATATAATGGTAGATGCAGAGCAGATTGATTCTCATTCTCAGAGATTAACTGATGGTGGGTTTGAGGAAGATGCTAATGCATATTGCTTTTATGCTAGGGACCATTACAAGAAAGGTGATCAGGTTCTATTATGCTATGGAACTTACACAAATTTGGAGCTTCTTGAGCACTATGGATTTCTCCTACATGAAAATCCAAATGACAAAATTTTCATCCCTTTGGAACCTGCTGTATATTCTTGCACTTCATGGTCTAAGGAATCATTCTATATCCATCATAATGGGAAGCCTTCCTTCGCACTCCTAGCTGCATTGCGGTTGTGGGCAACCCCTCAAAATAAGAGAAGGTCTGTTGGACATCTTGCATATTCTGGTTCTCAACTGTCTGAGGACAATGAAATTTTTGTTATAAAATGGCTATCAAAAACTTGTGATGCTGTCTTAAAGAATCTGCCAACATCTATTGAAGAAGACACCTTGCTCCTGAATGCAATGGGAAATAGTCAAGATTTTCTTACTTTCATGGAGTTCACAAAACTCATGTCTTCAAGGGATGAAATTTATACCTTCTTAGAAGCTCATAATATGAAGGATGCACATAGTTTTACCAATAAAAGTTTATCTATAAAAGTAAGAAGGTCCATGGACAGGTGGAAATTAGCTGTCCAATGGAGGCTGAGGTATAAGAAAGTCCTTGTTGATTGTATCTCTTATTGCAATGAAATTCTGGATTCTTTCATGAAATAA 1491 0.4024 MEEQEQPNLESFLTWAAQLGISDSTNTKQPQYSLSCLGHALCVSHFPHSGGRGLGAVRDLRRGEIILRVPKSALITSESVLEDKKLCVAVNRHSSLSSTQILIVCLLYEMGKGKTSRWYPYLMHLPHSYDVLATFGEFEKHALQVDEAMWVAEKAILKVKSEWKEAHALMEDLMFKPRLLTFKTWVWAAATISSRTLHIPWDEAGCLCPVGDLFNYDAPGEEPSGIEDVEHLLSNSSIHVAALSNGDKNIMVDAEQIDSHSQRLTDGGFEEDANAYCFYARDHYKKGDQVLLCYGTYTNLELLEHYGFLLHENPNDKIFIPLEPAVYSCTSWSKESFYIHHNGKPSFALLAALRLWATPQNKRRSVGHLAYSGSQLSEDNEIFVIKWLSKTCDAVLKNLPTSIEEDTLLLNAMGNSQDFLTFMEFTKLMSSRDEIYTFLEAHNMKDAHSFTNKSLSIKVRRSMDRWKLAVQWRLRYKKVLVDCISYCNEILDSFMK* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01068 496 Gene3D set domain protein methyltransferase, domain 1 6 309 - -
Rops9g01068 496 SUPERFAMILY SET domain 7 313 IPR046341 -
Rops9g01068 496 CDD SET_LSMT 40 309 - -
Rops9g01068 496 ProSiteProfiles SET domain profile. 39 295 IPR001214 GO:0005515
Rops9g01068 496 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 8 430 - -
Rops9g01068 496 Pfam SET domain 51 295 IPR001214 GO:0005515
Rops9g01068 496 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 305 486 IPR036464 -
Rops9g01068 496 Pfam Rubisco LSMT substrate-binding 334 480 IPR015353 -
Rops9g01068 496 Gene3D - 325 495 IPR036464 -
Rops9g01068 496 FunFam Protein SET DOMAIN GROUP 40 9 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01068 Rops-Chr9 17461249 17465156 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01068 51 385 NAC Transcription Factor Family AT3G56570 22.917 1.64e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops9g01068 SET 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01068 - - gmx:100787452 872.848