Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01064 ATGGCACCTGTTTCATTGCCTCCAGGTTTTAGGTTCCACCCTACTGATGAAGAACTTGTTGCTTATTACCTCAAAAGGAAGATCAATGGCCGTAAGATTGAGTTGGAAATCATACCTGAAATTGATCTCTATAAGTGTGAACCATGGGACTTGCCAGGGAAGTCACTGTTACCGGGACATGATTTGGAGTGGTATTTCTTTAGCCCTCGAGATAGGAAATACCCAAATGGATCAAGAACGAATCGTGCAACCAAATCTGGATATTGGAAAGCCACAGGGAAGGATCGAAAAGTGAATTCCCAGACTCGAGCTGTGGGTATGAAGAAAACCCTAGTTTATTATAGAGGAAGAGCACCTCATGGTTGTCGCACTAATTGGGTTATGCATGAATATCGTCTTGACGAGAGAGAGTGTGAAATTCCTTCAGGCTTGCAGGATGCATATGCACTTTGCCGTGTGATCAAGAAGACTACAGTGATTGCACCAAAAGTTGGGGGGCATTATGTTAACGTTACCAGCCATGGCAACCGGATTACAAGCGATCAGTCATCAAGCATTGATCAGTTATACTCTGAAGGAAGGGGTGAAGATTTAGATAGCTCAAATTATTTGATGCCAATTGATACATGCTCACCCCACAATATGGGAAATGAGACTTGTTTCAATATCAATGGTGGGACAAGGGATCATGAGAAATGGTCACACTTCTCATCAGAAGACCCATTATTTAGTCTTCCAACTTCTTCATTTAATAATTATGGAGCCATAACATACCCTCAATCCAAGGTGGATATAGCACTAGAGTGTTCAAGGATGCAACATAGGTTTACTATGCCTCCTTTAGAAGTGGAGGACTTTCCTCAAGTTGGAATCTCTGAGCTGAAAATGACACAAGCCATGCAAGGAAGCAGAACTGAAACGGATATCTTGCAGGAAATTCTTTCAGTTGCTCATGTTTCTCAGGAATTGATAAATCAATCCAGCTACTCACAAGCATGGGGTAGCAATGAAAATTATGCTCCTCGTGAAGATGACTTTACTTTCATGGTTGGCACTAACTACAATCATATAAATGATATGAGCTCCATGAGATATGTTAACAAAACGTGGGAAGATTCGAACACAAGATCGATAGAGATCAGTGATCTGGATGAAGAATTTAAGGCAGAGAGGATGGTAGAGAATTTAAGATGGGTTGGAATGTCAAGCAAAGATTTAGAAAAGATGGAAGAACAACAGATTGTTCCAATCGAGGATATCTCAAGCTTCCAAACAATCAGGGAAGAAAATGAGGTGCAAGAATCTGAGCAACACAATAGCAACCAGGACCACAATGACACTGACATCAACGATTTCTCATATGGCTTCATCAATGATAGTGATCCCAACGAGAACTTTATAGAAGATGGTAATAACATGGAAGATTACTCAAGTTCTCCAAGCTTTGAGGTCATTGAGAAAATAAAGGAAGAAGTGGAAATTTGGAAACCATGCCTTGAAGATGTGAATAAAAAACGGAGTGATCCAGTTCCTCTACCTGTAGATCAACCAGTTTCAACTCTAGACGTTGCAGATCCAGCTCTTAAACCAGCTCCAGTCACAGTAGATCCAGCTTTTTCTCAAGCTCTAGACACAGAATTGAGCTATGAGACGCCAAGATCTGCTATAGGGCTGCTGGGTCATTACACAGAGGAAATTTGGTTTGAGGCTGCTGCAATGGTGTTGGTATTAGGCTGTTTCAATCCCTTAAGCATCATCCTGAGGTGCAAAAGGAATCTGTTTTGGGTTTCAGTAGTAATATGTGGTGCAAGGACTTCAGGGGTAAGGATAGAGGCTGCTCCTGAGGTGCTGGACGAATCTGTTTTAAGGTGCACTTCTGTGGTTCTGGCTGTGAGCAAATAG 1902 0.4169 MAPVSLPPGFRFHPTDEELVAYYLKRKINGRKIELEIIPEIDLYKCEPWDLPGKSLLPGHDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQTRAVGMKKTLVYYRGRAPHGCRTNWVMHEYRLDERECEIPSGLQDAYALCRVIKKTTVIAPKVGGHYVNVTSHGNRITSDQSSSIDQLYSEGRGEDLDSSNYLMPIDTCSPHNMGNETCFNINGGTRDHEKWSHFSSEDPLFSLPTSSFNNYGAITYPQSKVDIALECSRMQHRFTMPPLEVEDFPQVGISELKMTQAMQGSRTETDILQEILSVAHVSQELINQSSYSQAWGSNENYAPREDDFTFMVGTNYNHINDMSSMRYVNKTWEDSNTRSIEISDLDEEFKAERMVENLRWVGMSSKDLEKMEEQQIVPIEDISSFQTIREENEVQESEQHNSNQDHNDTDINDFSYGFINDSDPNENFIEDGNNMEDYSSSPSFEVIEKIKEEVEIWKPCLEDVNKKRSDPVPLPVDQPVSTLDVADPALKPAPVTVDPAFSQALDTELSYETPRSAIGLLGHYTEEIWFEAAAMVLVLGCFNPLSIILRCKRNLFWVSVVICGARTSGVRIEAAPEVLDESVLRCTSVVLAVSK* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01064 633 FunFam Nac domain-containing protein 86 15 159 - -
Rops9g01064 633 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Rops9g01064 633 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Rops9g01064 633 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Rops9g01064 633 MobiDBLite consensus disorder prediction 430 445 - -
Rops9g01064 633 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Rops9g01064 633 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 311 - -
Rops9g01064 633 MobiDBLite consensus disorder prediction 430 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01064 Rops-Chr9 17396722 17409336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01064 1 489 NAC Transcription Factor Family AT1G65910 48.996 1.18e-141 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops9g01064 NAM 2.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01064 - - gmx:100809019 826.624