Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01060 ATGGCGACTCAAGGTCAAAATGGAGTTACTAGATCGCAGGATGGTCTTTCAGTTGGAAATGGAGTATCTTTTAATTCTGGAGTGCATTCTAGTGCGCGTATTCAAAAACTAAATGATCAGTTTTCTTGCGAAAATGACCATACATTGAAGGTAAGGAAACCTTATACTATCACGAAGCAGAGAGAGAGGTGGACAGATGAAGAACATAAGAAATTCCTTGAAGCTTTAAAGTTGTATGGCCGGGCCTGGCGACGAATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTACTAAGATTCTTCGGGACTCTAATGGGAACAACACAACATTGGTGGAGTCAATTGAAATCCCCCCTCCAAGGCCAAAAAGAAAGCCAACTCGTCCTTACCCTCGTAAACTAATTGATATCCCAAATAACGAAATTTCCAACACAGCACAGCCACTGAGGTCTAATTCTCTCAAGTCATCAGATTTTGGTCAAGAAAACGAATCTCCCAAGTCAGTATTATCTGCAGTTGTTTCAGAAAATGGTTCCTCCGATTCAGATACTCCAACTGGAAGTTTGTCTCCAGTTTCATCCATTAGTGCTGTCCATAACTTTCCACTTGCTGAGCCCAAAACATCATTTGAGGAACATGGATCTCCACCACCAGATGGACTAAATTCTGGTTCAGCTCATGATAATCAACCTCTTGAGAAACTCAAGCTTTTCTCTCAAGAAAGTGCTTCTACCAAAGATGACACAGCAGAGGAATCATCTGGTCGTACTCTTAAACTGTTTGGGACAACTGTATTGGTAACAGATACCTGCAAACCTTCTTCTCCAACAATGGAGCCAAGCAAACCTATACCTACCATGTATATTATGCAACTTCAGAGTGGATGTTCAGATATTGCAGGTGGTCCTGCAACTATTGTGCCTTGGTGGATCATGCCACATCACAAGGAGCCTGAGGGGAAACATGTATATTCTAATCTTGGAGAATGTGAAAATAAAGAAGTTCAAAAGGAAGGATCATGGACTGGTTCAAACACTAGTTCAATGAATGATGGAGAGAACAATGAAAGATCAAACGATCAAGCCAAAAGTCATGTACATTGCTTTAGCAAAGGGGATGAAAAGTTGAACCTTTTTGGCTACCCTTCAACACAAAATGAAACATCAGCTATATCTAAGCTAAGAGTGAGACCTAAAACCTGTGGGAAAGGGTTTGTACCATATAAAAGGTGCATGACAGAGAGAGAAAACAAATGTGAAGAGAGGGAAGAGCAACGTTTCAGACTCTCCTTATAG 1323 0.4089 MATQGQNGVTRSQDGLSVGNGVSFNSGVHSSARIQKLNDQFSCENDHTLKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFTKILRDSNGNNTTLVESIEIPPPRPKRKPTRPYPRKLIDIPNNEISNTAQPLRSNSLKSSDFGQENESPKSVLSAVVSENGSSDSDTPTGSLSPVSSISAVHNFPLAEPKTSFEEHGSPPPDGLNSGSAHDNQPLEKLKLFSQESASTKDDTAEESSGRTLKLFGTTVLVTDTCKPSSPTMEPSKPIPTMYIMQLQSGCSDIAGGPATIVPWWIMPHHKEPEGKHVYSNLGECENKEVQKEGSWTGSNTSSMNDGENNERSNDQAKSHVHCFSKGDEKLNLFGYPSTQNETSAISKLRVRPKTCGKGFVPYKRCMTERENKCEEREEQRFRLSL* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01060 440 PANTHER SWI/SNF COMPLEX-RELATED 36 365 - -
Rops9g01060 440 SMART sant 60 108 IPR001005 -
Rops9g01060 440 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Rops9g01060 440 MobiDBLite consensus disorder prediction 346 364 - -
Rops9g01060 440 SUPERFAMILY Homeodomain-like 55 109 IPR009057 -
Rops9g01060 440 ProSiteProfiles SANT domain profile. 59 110 IPR017884 -
Rops9g01060 440 MobiDBLite consensus disorder prediction 344 372 - -
Rops9g01060 440 CDD SANT 63 106 IPR001005 -
Rops9g01060 440 MobiDBLite consensus disorder prediction 147 202 - -
Rops9g01060 440 Gene3D - 63 109 - -
Rops9g01060 440 MobiDBLite consensus disorder prediction 119 202 - -
Rops9g01060 440 FunFam protein REVEILLE 6 isoform X1 63 111 - -
Rops9g01060 440 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Rops9g01060 440 MobiDBLite consensus disorder prediction 216 238 - -
Rops9g01060 440 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Rops9g01060 440 Pfam Myb-like DNA-binding domain 61 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01060 Rops-Chr9 17363820 17367664 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops9g01060 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01060 - - gmx:100785040 601.668