Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01036 ATGACCTTGGAAGGGATTTTCATTGAGCCCACTTCAACAACTGCTCCTGATCTATCTCTTCACATAAGCCCCCCAAGCATTTCATCTTCCTTGGTTTGCAATAACACCACCAACAATTATGAATCAGCTTCTAATTTCCCTTCAAGGACTGTCTCTCAAGCCCATACTGAGCTTTCTCTGGGAAGGAATTTTACTACCCCAGAGGAAACACCACACAACCCTTATTATCAAAACCAAACCCATTTCCCTCATCTTCACTACCACACCAACAACAACAGTACAAGTACAACAGGTACCTCTCCTTTGAATCACATAAACTATGGAGTTTCATTGCTTGATGTATCATCTGACGGTTTGAGGCCAATCAAGGGGATTCCGGTGTATCACAACCGTTCATTCCCTTACTTGCCTATGGACCATTTGAAAGAGAAGGATCATCATCATCTTCACAAGATGTGCTTATATCATCACATGCCTTCTTTTCCTTCTTTGTCCTCTTCCTCTTCCTCTCTGTACTCCACTCCTCCTTCCTCTTCTTCACCTTCACCCTACTTTGCAACGGGTTTGGATCCCACTGCAGCGTGTAGGGTAGCCACCGCCACAAGGTTTAATGGATTTTCTACTGAAGCTTTGAAATCTCATCCATTGCACCATCACTCACAATATGGGGTTACCGCTTCTGAAGCCTCTTCTGGGTTAATGAGATCAAGGTTTTTGCCTAAGCTTCAAACAAAGAGAAGCATGAGAGCACCCAGAATGAGGTGGACAAGTACCCTCCATGCTAGATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACTCCAAAGTCAGTTCTTGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACTACTGACAAACCTGCAGCTTATTCAGGCCATTCAGATGGATCTGGAGAAGATGAATTGTCACCAATGGGAAACAGTGCTGAACACCGTGGTTCACGTCAATTCACAGACCAAAGAGTTCGACCAGATAGAGCAATGCAACAAGATATGGAATACTCTTCAACCACCAACACTCTATGGAGTAACTCTTCAAGTTGTAGAGAGCCATGGCTACGAACCACTTCTAACGACATAGATAGTGTCAGGCCTCAAACGATATCAGGAGGACATCAAATTCAGGAGTGTGATTCAACCCAACTCAAAAACAGTTTGTCGTGTTCAAATTTGGAGTACAAGAACCCAAGCTTGGAGTTCACATTAGGCAGACCAGATTGGCATGGCAAAGAACAAGCCTAA 1314 0.4384 MTLEGIFIEPTSTTAPDLSLHISPPSISSSLVCNNTTNNYESASNFPSRTVSQAHTELSLGRNFTTPEETPHNPYYQNQTHFPHLHYHTNNNSTSTTGTSPLNHINYGVSLLDVSSDGLRPIKGIPVYHNRSFPYLPMDHLKEKDHHHLHKMCLYHHMPSFPSLSSSSSSLYSTPPSSSSPSPYFATGLDPTAACRVATATRFNGFSTEALKSHPLHHHSQYGVTASEASSGLMRSRFLPKLQTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAAYSGHSDGSGEDELSPMGNSAEHRGSRQFTDQRVRPDRAMQQDMEYSSTTNTLWSNSSSCREPWLRTTSNDIDSVRPQTISGGHQIQECDSTQLKNSLSCSNLEYKNPSLEFTLGRPDWHGKEQA* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01036 437 SUPERFAMILY Homeodomain-like 248 304 IPR009057 -
Rops9g01036 437 Gene3D - 250 307 - -
Rops9g01036 437 NCBIfam myb-like DNA-binding domain, SHAQKYF class 251 304 IPR006447 GO:0003677
Rops9g01036 437 FunFam Myb family transcription factor 249 307 - -
Rops9g01036 437 MobiDBLite consensus disorder prediction 310 347 - -
Rops9g01036 437 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 435 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01036 Rops-Chr9 16928920 16935395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01036 1 434 G2-like Transcription Factor Family AT5G16560 41.702 7.23e-82 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops9g01036 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01036 - - gmx:100812229 552.362